View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_33 (Length: 284)
Name: NF11271_high_33
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 42979115 - 42978850
Alignment:
| Q |
1 |
ttatagaatttttgaggtattaaacttttaggcttaggaatataatgaatttttcatcaccattcatttgctatctgtgaaattaatttcatcnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42979115 |
ttatagaatttttgaggtattaaacttttaggcttaggaatataatgaatttttcatcaccattcatttgctatctgtgaaatgaatttcatcaaaaaaa |
42979016 |
T |
|
| Q |
101 |
caatttattaacaacattttcctgattgttcaaaaaactttcctgattatcctcataggaaattagaaaccgtggtctcaaggttgcagttgtaggaatc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42979015 |
caatttattaacaacattttcttgattgttcaaaaaactttcctgattatcctcataggaaattagaaaccgtggtctcaaggttgcagttgtaggaatc |
42978916 |
T |
|
| Q |
201 |
ccaaaaacgatagataacgacattccggtaattttttctacctcccctcttcctatttgtggattc |
266 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978915 |
ccaaaaacgatagataacgacattccggtaattttttctacctcccctcttcctatttgtggattc |
42978850 |
T |
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