View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_high_35 (Length: 277)
Name: NF11271_high_35
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 51027688 - 51027441
Alignment:
| Q |
11 |
cacagacgagttgaatatcaggatcagctgtcttctctcgttgcacttctttgtactccttgaacagcctcgcccttgatgcctgcgttaaaaacacaaa |
110 |
Q |
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| T |
51027688 |
cacaaacgagttgaatatcaggatcagctgtcttctctcgttgcacttctttgtactccttgaacagcctcgcccttgatgcctgcgttaaaaacacaaa |
51027589 |
T |
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| Q |
111 |
caaatccaatttcaatatgctaagctttctgcaattacaagaacacaaatccaattttgcataaccctaactaaccaataaccaccaacaaacaagacct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51027588 |
caaatccaatttcaatatgctaagctttctgcaattacaagaacacaaatccaattttgcataaccctaactaaccaataaccaccaacaaacaagacct |
51027489 |
T |
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| Q |
211 |
actaatcaattcaatacaagataattgaagacactaagaattgcatcc |
258 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51027488 |
actaatcaattcaatacaagataattgaagtcactaagaattgcatcc |
51027441 |
T |
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