View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11271_high_44 (Length: 232)
Name: NF11271_high_44
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_high_44 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 14222523 - 14222383
Alignment:
| Q |
92 |
cgaattcaaatgaaaattgaaaatgttgcttgtagattcctgcagacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222523 |
cgaattcaaatgaaaattgaaaatgttgctcgcagattcctgcggacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
14222424 |
T |
|
| Q |
192 |
caggagtttgatctcccatattggctcttcgtccagaaatc |
232 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14222423 |
ccggagtttgatctaccatattggctcttcgtccagaaatc |
14222383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 14228893 - 14228753
Alignment:
| Q |
92 |
cgaattcaaatgaaaattgaaaatgttgcttgtagattcctgcagacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
191 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14228893 |
cgaatttatatgaaaattgaaaatgttgcttgcagattcctgcggacatggtggtaaattcgatgataatagcatccgtggctcgtagtaagaatctttg |
14228794 |
T |
|
| Q |
192 |
caggagtttgatctcccatattggctcttcgtccagaaatc |
232 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14228793 |
caggagtttgatctaccatattggctcttcgtccagaaatc |
14228753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University