View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_high_47 (Length: 225)

Name: NF11271_high_47

Description: NF11271

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11271_high_47

[»] chr6 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 146; E-Value: 5e-77

Query Start/End: Original strand, 68 - 213

Target Start/End: Original strand, 34787315 - 34787460

Alignment:

Q	68	agccgaaaagcccgtgaagaaacctatttaaataagaaagatttacacactcaacagaaacaaaaacacattcttcctctttctctatcgttagggtttt	167	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34787315	agccgaaaagcccgtgaagaaacctatttaaataagaaagatttacacactcaacagaaacaaaaacacattcttcctctttctctatcgttagggtttt	34787414	T

Q	168	ccaagccctagccatgtcttcttccaaagttgcagacccaacccta	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34787415	ccaagccctagccatgtcttcttccaaagttgcagacccaacccta	34787460	T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 173 - 213

Target Start/End: Complemental strand, 2293777 - 2293737

Alignment:

Q	173	ccctagccatgtcttcttccaaagttgcagacccaacccta	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2293777	ccctagccatgtcttcttccaaagatgcagacccaacccta	2293737	T

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