View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_12 (Length: 528)
Name: NF11271_low_12
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 148 - 509
Target Start/End: Original strand, 11163391 - 11163752
Alignment:
| Q |
148 |
tttttatagaatgcaataacatattggtaactaagttgcatagttagcaagcctaggtaggaaggatgattgctcgttgacagatctttaatttgaaaaa |
247 |
Q |
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| T |
11163391 |
tttttatagaatgcaataacatattggtaactaagttgcatagttagcaagcctaggtaggaaggatgattgctcgttgacagatctttaatttgaaaaa |
11163490 |
T |
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| Q |
248 |
atttgcatcaaaatcttcatgagcaatcatataaaggagttatatacttctataagcaagccagacaatttatctatcttaaagttgacattgtaacacc |
347 |
Q |
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| T |
11163491 |
atttgcatcaaaatcttcatgagaaatcatataaaggagttatatacttctataagcaaaccagacaatttatctatcttaaagttgacattgttacccc |
11163590 |
T |
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| Q |
348 |
ttaaacaataattttcccaatacaatttgcatgaagttttaactactatttggctaattgataaaaattatataccaatgaaagataagttagaagatga |
447 |
Q |
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| T |
11163591 |
ttaaacaataattttcccaatacaatttgcatgaagttttgactactatttggctaattgataaaaattatataccaatgaaagataagttagaagatga |
11163690 |
T |
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| Q |
448 |
cttgaaaattctactagagtttcactaaaattgactagaacaaggagaagataattcaaatt |
509 |
Q |
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| T |
11163691 |
cttaaaaattctactagagtttcactaaaattgactagaacaagtagaagataattcaaatt |
11163752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 11163184 - 11163317
Alignment:
| Q |
19 |
gtaaaccaatgttgttaaatatcggccatggtcgcgccttgaagg-attgcattatttgaagagtcgctgattttttggcaaacaccaaggctaatttgt |
117 |
Q |
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| T |
11163184 |
gtaaaccaatgttgttaaatatcggccatggtcgcgccttgaagggattgcattatttgaagagtcgctgattttttggcaaacaccacggctaatttgt |
11163283 |
T |
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| Q |
118 |
gaaggatggaggtttcaaggtttcatggcatttt |
151 |
Q |
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| T |
11163284 |
gaaggatggaggtttcaaggtttcatggcatttt |
11163317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 11319689 - 11319603
Alignment:
| Q |
169 |
tattggtaactaagttgcatagttagcaagcctaggtaggaaggatgattgctcgttgacagatctttaatttgaaaaaatttgcat |
255 |
Q |
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| T |
11319689 |
tattggtaactaagtggcatagttagcaagcttaggtaggaagaatgattgctcgttgacagatttttaatttgaaaaaatttgcat |
11319603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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