View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_18 (Length: 436)
Name: NF11271_low_18
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Original strand, 36016757 - 36017160
Alignment:
| Q |
15 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016757 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
36016856 |
T |
|
| Q |
115 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016857 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
36016956 |
T |
|
| Q |
215 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016957 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcactgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
36017056 |
T |
|
| Q |
315 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
414 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017057 |
acgtggaattatgggttctctggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctcg |
36017156 |
T |
|
| Q |
415 |
gctg |
418 |
Q |
| |
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|||| |
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|
| T |
36017157 |
gctg |
36017160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 20138231 - 20137833
Alignment:
| Q |
15 |
catagggtaactacccaaaactctcaagaaagacgtgaattcctgaacttcagccaacgcgttttgtgctctaacttcagccattgaagcttcaaaatca |
114 |
Q |
| |
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|||||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || |||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
20138231 |
cataggataactccccaaaactcttaagaaagatgtaaactcttgaacttcagcaagtgcattttgtgccctaacctcagccatagaagcctcaaaatca |
20138132 |
T |
|
| Q |
115 |
acataaaacaaatactcaaaatgcttcgcagttccaacatttgcatcatcaacaagcctaatcggacggttacgatgtggccttgattcaatcttcgtta |
214 |
Q |
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| |||||||| |||||||||||| || || ||||| || || ||||||| |||| | |||||||||| |||||| ||||| ||||||||||| |||| |
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| T |
20138131 |
atataaaacatatactcaaaatgtttagctgttccttcactttcatcatccacaactcgaatcggacggccacgatgaggcctagattcaatcttagtta |
20138032 |
T |
|
| Q |
215 |
aactaatattcctaaacgcaaaagctgaaagcactttgaaaagcaccgaagttcctttatcatgagcgaaaacaatacttgttttaaatggacgatccgt |
314 |
Q |
| |
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| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| || |
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| T |
20138031 |
agctgatattcctaaacgcaaaagctgaaagcactttaaaaagcactgaagttcctttatcatgagcaaaaacaatacttgttttgaaaggacgatcggt |
20137932 |
T |
|
| Q |
315 |
acgtggaattatgggttctcgggccaacataacgaatcgggttacgttacttgggtcatcttgaattccatctgctaagatatttaatccataaagctc |
413 |
Q |
| |
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| |||||| |||||||||| ||||||||||| || || || |||||| |||| |||||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
20137931 |
tcttggaataatgggttctcttgccaacataacaaaccgtgtcacgttatttggatcatcttgtattccatcagctaagatatttaatccgtaaagctc |
20137833 |
T |
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