View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_21 (Length: 416)
Name: NF11271_low_21
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 48439193 - 48438785
Alignment:
| Q |
1 |
ttaccaagaaccctggtgaggaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttgg |
100 |
Q |
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| T |
48439193 |
ttaccaagaaccctggtgatgaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttgg |
48439094 |
T |
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| Q |
101 |
aaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgnnnnnnnnnnagttttgtataagttactagcaagt |
200 |
Q |
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| T |
48439093 |
aaaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtacacttttgtgttttttttttagttttgtataagttactagcaagt |
48438994 |
T |
|
| Q |
201 |
gttttcttaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgttgacatcaattggaaac |
300 |
Q |
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| T |
48438993 |
gttttcttaatttgatttattcgacgactctagactatatggactaatctttggatattatttgattggattctattaggtgttgacatcaattggaaac |
48438894 |
T |
|
| Q |
301 |
ttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattgacaatttgctgg |
400 |
Q |
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| T |
48438893 |
ttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattgacaatttgctgg |
48438794 |
T |
|
| Q |
401 |
ttcatctca |
409 |
Q |
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| T |
48438793 |
ttcttctca |
48438785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 44530469 - 44530594
Alignment:
| Q |
30 |
tctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgctcaccttgttgatagcacta |
129 |
Q |
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| T |
44530469 |
tctggttctacctgcaaacaaggagagatcgaaggcgtggtcatagctactggtgttcatacctttttcggtaaagctgctcaccttgtagatactacaa |
44530568 |
T |
|
| Q |
130 |
acaatgttggtcacttccaaaaggta |
155 |
Q |
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| T |
44530569 |
accaagttggtcacttccaacaggta |
44530594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 21982719 - 21982572
Alignment:
| Q |
8 |
gaaccctggtgaggaagtcttctctggttccacctgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggct |
107 |
Q |
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| T |
21982719 |
gaaccctggtcaagaggtcttctctggttcaacttgcaagcaaggtgaaatcgaggctattgtcattgccactggtgtccacaccttctttgggaaggct |
21982620 |
T |
|
| Q |
108 |
gctcaccttgttgatagcactaacaatgttggtcacttccaaaaggta |
155 |
Q |
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| T |
21982619 |
gcacaccttgttgatagcaccaacaatgttggtcacttccaaaaggta |
21982572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 21982307 - 21982173
Alignment:
| Q |
275 |
attaggtgttgacatcaattggaaacttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcata |
374 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||| ||||||| || ||||||||||| || |||||| | ||| | || |
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| T |
21982307 |
attaggtgttgacatccattggtaacttctgtatctgctcaattgctgtgggaatggtgattgaaatcattgtgatgtatcccatccaaaatagagctta |
21982208 |
T |
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| Q |
375 |
tagagaaggtattgacaatttgctggttcatctca |
409 |
Q |
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||||| ||||||||||| ||| |||||| ||||| |
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| T |
21982207 |
cagagatggtattgacaacttgttggttcttctca |
21982173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 45199631 - 45199478
Alignment:
| Q |
3 |
accaagaaccctggtgaggaagtcttctctggttccacctgcaaa-caaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttgga |
101 |
Q |
| |
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||||||||||||||||| |||||||||||||| || || || ||| ||||| || | || || |||| || || |||||||| || ||||||||||| |
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| T |
45199631 |
accaagaaccctggtgatgaagtcttctctggctctac-tgtaaagcaaggagaactcgaggcgattgtaattgctactggtgtgcacaccttctttggt |
45199533 |
T |
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| Q |
102 |
aaggctgctcaccttgttgatagcactaacaatgttggtcacttccaaaaggtac |
156 |
Q |
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| T |
45199532 |
aaggctgctcatttggtcgacagcactaaccaagttggtcatttccaaaaggtac |
45199478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 3152574 - 3152644
Alignment:
| Q |
42 |
tgcaaacaaggtgagattgaagctgttgtcatcgccactggtgttcataccttctttggaaaggctgctca |
112 |
Q |
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| T |
3152574 |
tgcaagcaaggagagatagaagctgttgttattgcgactggagttcataccttctttggcaaggctgctca |
3152644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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