View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_23 (Length: 406)
Name: NF11271_low_23
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 38568900 - 38568510
Alignment:
| Q |
1 |
tgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatggtgatgattaaattaattacaggtttctttgaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38568900 |
tgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatgatgatgattaaattaattacaggtttctttgaaa |
38568801 |
T |
|
| Q |
101 |
tatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagatgatgaannnnnnngtatatgaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38568800 |
tatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagatgatgaatttttttgtatatgaagaaa |
38568701 |
T |
|
| Q |
201 |
agacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtattt |
300 |
Q |
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| T |
38568700 |
agacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtattt |
38568601 |
T |
|
| Q |
301 |
gaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttctt |
391 |
Q |
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| T |
38568600 |
gaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttctt |
38568510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 68 - 391
Target Start/End: Complemental strand, 38527530 - 38527209
Alignment:
| Q |
68 |
tgatgattaaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgta-tta |
166 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||| |
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| T |
38527530 |
tgatgataaaattgattacaggtgtctttgaaatttgtatatttggcagtaggatctggggtggcagcatttctccgtaagtatagtat-tttgtaatta |
38527432 |
T |
|
| Q |
167 |
att-aagatgatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacagga |
265 |
Q |
| |
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||| ||||||||||| |||||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
38527431 |
atttaagatgatgaatttttttgtatatgaagaaaagacactaaacttatgataa-ttgttt--gtattttcagaggtgagttgttggatggtaacagga |
38527335 |
T |
|
| Q |
266 |
gaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtag |
365 |
Q |
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| T |
38527334 |
gaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtag |
38527235 |
T |
|
| Q |
366 |
gaagaatgtctggtgatactgttctt |
391 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
38527234 |
gaagaatgtctggtgatactgttctt |
38527209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 391
Target Start/End: Original strand, 51197930 - 51198085
Alignment:
| Q |
236 |
tcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttg |
335 |
Q |
| |
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|||||| ||| ||| |||||| |||| || || ||||| ||||||||||| ||| | || || | ||||||| || || |||||||| | |||||||| |
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| T |
51197930 |
tcagagttgacttgctggatgattaccggtgagagacaggctgcaagaatcagaagcttatacctccaaacaattttgaggcaagatgtgagtttctttg |
51198029 |
T |
|
| Q |
336 |
ataaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttctt |
391 |
Q |
| |
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|||| ||||| | || ||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
51198030 |
ataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttctt |
51198085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 51144316 - 51144430
Alignment:
| Q |
277 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtct |
376 |
Q |
| |
|
||||||||| ||||| || ||| | |||||||| || || |||||||| | |||||||||||| ||||| | || ||||| ||||| ||||||||||| |
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| T |
51144316 |
tgcaagaattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatacgggagaggttgttggaagaatgtca |
51144415 |
T |
|
| Q |
377 |
ggtgatactgttctt |
391 |
Q |
| |
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||||||||||||||| |
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| T |
51144416 |
ggtgatactgttctt |
51144430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 391
Target Start/End: Original strand, 51211457 - 51211611
Alignment:
| Q |
237 |
cagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttga |
336 |
Q |
| |
|
|||||||| |||||||||| | ||||| || ||||| |||||||||||||| | ||| || | ||| |||| ||||| |||||| | | ||||||||| |
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| T |
51211457 |
cagaggtgtcttgttggatgatcacaggggagagacaggctgcaagaataagggcattatacctcaaagcaattttaaggcaagatatcagtttctttga |
51211556 |
T |
|
| Q |
337 |
taaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttctt |
391 |
Q |
| |
|
|| |||||| | | || || ||||| ||||||||||| |||||||| |||||| |
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| T |
51211557 |
caaggaaacaaatagtggtgaggttgttggaagaatgtcaggtgatacagttctt |
51211611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 5833701 - 5833568
Alignment:
| Q |
248 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | | ||||| |||||||| |||||| ||| ||| || | |||||||||| |||||| |
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| T |
5833701 |
tgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccatattacaacaggatattgcattctttgatactgaaacaa |
5833602 |
T |
|
| Q |
348 |
acacaggagaagttgtaggaagaatgtctggtga |
381 |
Q |
| |
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|||||||||| || | || |||||||||||||| |
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| T |
5833601 |
acacaggagaggtaattggtagaatgtctggtga |
5833568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 5764127 - 5764260
Alignment:
| Q |
248 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
347 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | |||||| |
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|
| T |
5764127 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
5764226 |
T |
|
| Q |
348 |
acacaggagaagttgtaggaagaatgtctggtga |
381 |
Q |
| |
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||||||||||||| | || |||||||||||||| |
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| T |
5764227 |
acacaggagaagtaattggtagaatgtctggtga |
5764260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 384
Target Start/End: Original strand, 5821051 - 5821187
Alignment:
| Q |
248 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | || ||||| |||||||| ||| ||| |||||| || | | |||||| | ||| || |
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|
| T |
5821051 |
tgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttcctactttgacactgaagcaa |
5821150 |
T |
|
| Q |
348 |
acacaggagaagttgtaggaagaatgtctggtgatac |
384 |
Q |
| |
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|| ||||| ||| | |||||||||||||||||||| |
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|
| T |
5821151 |
ccagtggagaggttattggaagaatgtctggtgatac |
5821187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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