View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_24 (Length: 406)
Name: NF11271_low_24
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 51 - 395
Target Start/End: Original strand, 20170464 - 20170804
Alignment:
| Q |
51 |
ttaagctcctaaatatgtggccatgctttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaac |
150 |
Q |
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| T |
20170464 |
ttaagctcctaaatatgtggccatactttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaac |
20170563 |
T |
|
| Q |
151 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaat |
250 |
Q |
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| T |
20170564 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaat |
20170663 |
T |
|
| Q |
251 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataag |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20170664 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataag |
20170759 |
T |
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| Q |
351 |
tgttctttcaaaaacattgagtaagcaagacagatcatcattcat |
395 |
Q |
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| T |
20170760 |
tgttctttcaaaaacatcgagtaagcaagacagatcatcattcat |
20170804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 51 - 395
Target Start/End: Original strand, 44392174 - 44392514
Alignment:
| Q |
51 |
ttaagctcctaaatatgtggccatgctttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaac |
150 |
Q |
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| T |
44392174 |
ttaagctcctaaatatgtggccatactttcttatatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaac |
44392273 |
T |
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| Q |
151 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44392274 |
tcacaattaaagtcttcgtatcatttcacaaaggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaat |
44392373 |
T |
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| Q |
251 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataag |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44392374 |
atatgtgataggttgataacatgatatgaaatgagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataag |
44392469 |
T |
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| Q |
351 |
tgttctttcaaaaacattgagtaagcaagacagatcatcattcat |
395 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44392470 |
tgttctttcaaaaacatcgagtaagcaagacagatcatcattcat |
44392514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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