View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_26 (Length: 364)
Name: NF11271_low_26
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 38568898 - 38569251
Alignment:
| Q |
1 |
acagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcggacacgacactccctgatttaccacgctagactacgacaaaaagagaaatcat |
100 |
Q |
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| T |
38568898 |
acagctcgtttggtatagctgcaaagatgttgatatgcaggtgttcggacacgacactccccgatttaccacgctagactacgacaaaaagagaaatcat |
38568997 |
T |
|
| Q |
101 |
tcattaacgaatataatttcgtagcatggttttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaat |
200 |
Q |
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| T |
38568998 |
tcattaacgaatataatttcgtagcatggttttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaat |
38569097 |
T |
|
| Q |
201 |
catttgaccgaggagcactgtcatgataggtaaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgca |
300 |
Q |
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| T |
38569098 |
catttgaccgaggagcactgtcatgataggtaaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgca |
38569197 |
T |
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| Q |
301 |
aaagagaataatttgtgaaatggtactgtctcttgtttttcttttgtgatgtcc |
354 |
Q |
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| T |
38569198 |
aaagagaataatttgtgaaatggtactgtctcttgtttttcttttgttatgtcc |
38569251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 131 - 347
Target Start/End: Original strand, 38527615 - 38527831
Alignment:
| Q |
131 |
tttatgttaccttggtcacttggtcaacaatgtcctcggtgttagtttggttactaccgaaactatgaatcatttgaccgaggagcactgtcatgatagg |
230 |
Q |
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| T |
38527615 |
tttatgataccttggacacttgttctacaacatcggtggtgttactttggttactaccaaaactatcaatcatttgaccgaacaataatgtcataagagg |
38527714 |
T |
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| Q |
231 |
taaacccaaaccatttccaatagcaccaatagtaccaacaatcattaacagaatgtcagtggaatctgcaaaagagaataatttgtgaaatggtactgtc |
330 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||| ||||| |||||||||||| |||||| |
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| T |
38527715 |
taaacccaaaccgtttccaatagcaccgatagtaccaacaatcattaataaaatgtcagtagaatctgcaaaagtgaatagtttgtgaaatggaactgtc |
38527814 |
T |
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| Q |
331 |
tcttgtttttcttttgt |
347 |
Q |
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| T |
38527815 |
tcttgtttttcttttgt |
38527831 |
T |
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