View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_30 (Length: 304)
Name: NF11271_low_30
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_30 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 45998 - 46275
Alignment:
| Q |
13 |
gcagagattccaacacaaccaattacgagaaacaatgctccaaggagccagtgtgcaccagtgggatcgttcacattttcaggttgatgcatctgagtag |
112 |
Q |
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| T |
45998 |
gcagagattccaacacaaccaattacgagaaacaatgctccaaggagccagtgtgcaccagtgggatcgttcacattttcaggttgatgcatctgagtag |
46097 |
T |
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| Q |
113 |
ctgctgatgacccaagaacaggacctttgtatagtaccattagtagagcaccaccaagactcaccattgtgccaatcactttgccttgacatgctatctc |
212 |
Q |
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| T |
46098 |
ctgctgatgacccaagaacaggacctttgtatagtaccattagtagagcaccaccaagactcaccattgtgccaatcactttgccttgacatgctatctc |
46197 |
T |
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| Q |
213 |
cttaattttcataccttccaatctgctcaaacatgttaaaaaatatttcttatatttatgaaaatagggaccaatttg |
290 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46198 |
cttaattttcataccttccaatctgctcaaacatgataaaaaatatttcttatatttatgaaaatagggaccaatttg |
46275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 50 - 290
Target Start/End: Complemental strand, 21094955 - 21094706
Alignment:
| Q |
50 |
ctccaaggagccagtgtgcaccagtgggatcgttcacattttcaggttgatgcatctgagtagctgctgatgacccaa---------gaacaggaccttt |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
21094955 |
ctccaaggagccagtgtgcaccagtgggatcgttcacattttcaggttggtgcatctgagtagctgttgatgacccaacattttgaagaacaggaccttt |
21094856 |
T |
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| Q |
141 |
gtatagtaccattagtagagcaccaccaagactcaccattgtgccaatcactttgccttgacatgctatctccttaattttcataccttccaatctgctc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21094855 |
gtatagtaccattagtagagcaccaccaagactcaccattgtcccaatcactttgccttgacatgctatctccttaattttcataccttccaatctgctc |
21094756 |
T |
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| Q |
241 |
aaacatgttaaaaaatatttcttatatttatgaaaatagggaccaatttg |
290 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21094755 |
aaacatgataaaaaatatttcttatatttatgaaaatagggaccaatttg |
21094706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 10624795 - 10625080
Alignment:
| Q |
13 |
gcagagattccaacacaaccaattacgagaaacaatgctccaaggagccagtgtgcaccagtgggatcgttcacattttcaggttgatgcatctgagtag |
112 |
Q |
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||||||| ||| |||||||||| | || || ||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
10624795 |
gcagagaagccagcacaaccaatgagaaggaataatgcaccaaggagccagtgtgaaccactgggatcgttcacattttcaggttggtgcatctgggtag |
10624894 |
T |
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| Q |
113 |
ctgctgatgaccca---------agaacaggacctttgtatagtaccattagtagagcaccaccaagactcaccattgtgccaatcactttgccttgaca |
203 |
Q |
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| T |
10624895 |
ctgctgaagatccagcaatttgaagaactggacctttgtatagtgccattagaaatgcacctccaagactcaccactgtgccaatcactttggcttggca |
10624994 |
T |
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| Q |
204 |
tgctatctccttaattttcataccttccaatctgctcaaacatgttaaaaaatatttcttatatttatgaaaatagggaccaatttgat |
292 |
Q |
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| |||| |||||||||||||||| |||||||||||||||||||| ||||| || ||||||||| || || ||||||||||||||||| |
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| T |
10624995 |
tcctatttccttaattttcatacgttccaatctgctcaaacatgataaaa---atatcttatattaatcaacatagggaccaatttgat |
10625080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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