View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_low_31 (Length: 295)

Name: NF11271_low_31
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_low_31
NF11271_low_31
[»] chr1 (1 HSPs)
chr1 (1-295)||(34826424-34826719)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 34826424 - 34826719
Alignment:
Q  1 aatttataaacaacatgtgtttgtcgattgccgctagtatatgcatgtggacataatttgcttttcatgtgtgttcttcttttcctaannnnnnnnngnn 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||                
T  34826424 aatttataatcaacatgtgtttgtcgattgccgctagtatatgcatgtggacataatttgcttttcatgtgt--tcttcttttcctaatttctttttttt 34826521  T
Q  101 nnnnn---catgtgttcttccctttcgcaaatcaaattattactaccatcattaagttgtgatagtgtagcttatgacaacacaatgaatgtcctcgaat 197  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34826522 taaaaagacatgtgttcttccctttcgcaaatcaaattattactaccatcattaagttgtgatagtgtagcttatgacaacacaatgaatgtcctcgaat 34826621  T
Q  198 tatttgtatttgcatttaatcttaataatttcatttgaaatacgttattcattaattgatgctgataagggagatcagagagacagcagccatgcggg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34826622 tatttgtatttgcatttaatcttaataatttcatttgaaatacgttattcattaattgatgctgataagggagatcagagagatagcagccatgcggg 34826719  T

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