View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_low_33 (Length: 287)

Name: NF11271_low_33
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_low_33
NF11271_low_33
[»] chr6 (12 HSPs)
chr6 (1-272)||(6935121-6935392)
chr6 (3-202)||(6921323-6921522)
chr6 (5-271)||(6947769-6948050)
chr6 (1-200)||(6942942-6943128)
chr6 (5-200)||(6954494-6954689)
chr6 (5-175)||(20770550-20770720)
chr6 (116-175)||(17369675-17369734)
chr6 (101-171)||(14749393-14749463)
chr6 (220-272)||(6954407-6954459)
chr6 (107-154)||(19746715-19746762)
chr6 (87-154)||(34861892-34861959)
chr6 (57-173)||(24254428-24254544)
[»] chr7 (36 HSPs)
chr7 (5-272)||(1985843-1986125)
chr7 (46-175)||(13416911-13417040)
chr7 (52-187)||(18514775-18514910)
chr7 (52-187)||(15571883-15572018)
chr7 (57-173)||(19344577-19344693)
chr7 (104-175)||(14076677-14076748)
chr7 (104-175)||(14386705-14386776)
chr7 (79-174)||(19604464-19604559)
chr7 (106-175)||(660847-660916)
chr7 (79-175)||(22100467-22100563)
chr7 (67-175)||(6864807-6864914)
chr7 (87-175)||(9807806-9807894)
chr7 (99-175)||(22063636-22063712)
chr7 (79-154)||(22080842-22080917)
chr7 (62-168)||(22021349-22021455)
chr7 (105-174)||(29881256-29881325)
chr7 (79-175)||(20058057-20058153)
chr7 (62-173)||(22028585-22028696)
chr7 (79-154)||(22070085-22070160)
chr7 (105-175)||(19637217-19637287)
chr7 (105-175)||(29454103-29454173)
chr7 (105-174)||(29867236-29867305)
chr7 (105-173)||(12819918-12819986)
chr7 (101-173)||(19351071-19351143)
chr7 (101-173)||(19357906-19357978)
chr7 (105-173)||(19722018-19722086)
chr7 (99-175)||(20352089-20352165)
chr7 (111-175)||(29874517-29874581)
chr7 (105-187)||(29859454-29859536)
chr7 (62-159)||(16839397-16839494)
chr7 (101-174)||(18952906-18952979)
chr7 (101-174)||(18982953-18983026)
chr7 (101-174)||(18997599-18997672)
chr7 (98-187)||(20338917-20339006)
chr7 (99-187)||(20374491-20374579)
chr7 (107-175)||(24002201-24002269)
[»] chr4 (14 HSPs)
chr4 (62-175)||(53774797-53774910)
chr4 (62-175)||(3565701-3565814)
chr4 (62-175)||(8443454-8443567)
chr4 (79-175)||(11970982-11971078)
chr4 (79-175)||(11981683-11981779)
chr4 (99-175)||(3557720-3557796)
chr4 (67-175)||(3560958-3561066)
chr4 (98-171)||(837769-837842)
chr4 (62-137)||(10475164-10475239)
chr4 (99-181)||(6372439-6372521)
chr4 (62-152)||(10464226-10464316)
chr4 (116-174)||(6392835-6392893)
chr4 (105-141)||(10468042-10468078)
chr4 (105-141)||(10482181-10482217)
[»] chr2 (9 HSPs)
chr2 (79-187)||(14514874-14514982)
chr2 (99-173)||(18908811-18908885)
chr2 (99-173)||(18920767-18920841)
chr2 (100-173)||(18913559-18913632)
chr2 (79-175)||(554450-554546)
chr2 (105-159)||(25698507-25698561)
chr2 (104-152)||(20975557-20975605)
chr2 (103-175)||(25377072-25377144)
chr2 (105-166)||(20980604-20980665)
[»] chr5 (6 HSPs)
chr5 (62-173)||(29647633-29647744)
chr5 (53-175)||(18964830-18964952)
chr5 (90-173)||(29597554-29597637)
chr5 (94-173)||(29642348-29642427)
chr5 (99-174)||(24330900-24330975)
chr5 (107-154)||(23086784-23086831)
[»] chr1 (8 HSPs)
chr1 (87-181)||(50645479-50645573)
chr1 (105-176)||(4570927-4570998)
chr1 (99-174)||(21855384-21855459)
chr1 (108-174)||(4014966-4015032)
chr1 (105-175)||(39379061-39379131)
chr1 (105-174)||(10218985-10219054)
chr1 (105-187)||(17560761-17560843)
chr1 (110-175)||(15961233-15961298)
[»] scaffold0867 (1 HSPs)
scaffold0867 (79-175)||(4669-4765)
[»] chr8 (6 HSPs)
chr8 (87-141)||(42846459-42846513)
chr8 (87-188)||(27618473-27618574)
chr8 (107-159)||(29390288-29390340)
chr8 (89-159)||(11339435-11339505)
chr8 (89-159)||(11345117-11345187)
chr8 (107-151)||(11338600-11338644)
[»] chr3 (4 HSPs)
chr3 (111-175)||(3625740-3625804)
chr3 (103-175)||(25901279-25901351)
chr3 (103-175)||(25915297-25915369)
chr3 (100-154)||(3837904-3837958)
[»] scaffold0354 (1 HSPs)
scaffold0354 (116-171)||(7474-7529)
[»] scaffold0267 (1 HSPs)
scaffold0267 (100-154)||(13385-13439)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6935392 - 6935121
Alignment:
Q  1 aaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6935392 aaaattgttgctccctcgatgttgtgatgaagagctacatggctttcctactctttctggattgatggattgcctctatttttcttatgattttaagaaa 6935293  T
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6935292 acccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaa 6935193  T
Q  201 ctcacgagacctattatcctcctcgattgattccattgtgtttttgtaataatggtgatacattgatatttg 272  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6935192 ctcacgagacctattatcctcctcgattgattccattgtgcttttctaataatggtgatacattgatatttg 6935121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 6921522 - 6921323
Alignment:
Q  3 aattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaac 102  Q
    ||||||||||||||| ||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6921522 aattgttgctccctcgatgttgtgatgaagagctacataatgttccaactctttctgtattgatggattgcctctatttttcttatgattctaagaaaac 6921423  T
Q  103 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaact 202  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| | |  |||||||||||    
T  6921422 ccattttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatacgaatcttctaaacaattttaaaact 6921323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 6948050 - 6947769
Alignment:
Q  5 ttgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaaccc 104  Q
    ||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||| | ||||||  ||||||| ||||||||||    
T  6948050 ttgttgctccctcgatgttgtgatgaagagctacatgatgttccaactctttctgtgttgatggattgcctttgtttttcacatgatttcaagaaaaccc 6947951  T
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaactca 204  Q
    | |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||   ||||||| | ||||| |||||| |||    
T  6947950 actttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttatgtgaatcttccaaaagatattaaaattca 6947851  T
Q  205 cgag---------------acctattatcctcctcgattgattccattgtgtttttgtaataatggtgatacattgatattt 271  Q
     |||               |||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  6947850 tgagtttcataatggtccaacctattatcctcctcaattgattccactgtgtttttctaacaatggtgatacattgatattt 6947769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6943128 - 6942942
Alignment:
Q  1 aaaattgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||             ||||||||||||||||||||||||||||||||||||    
T  6943128 aaaattgttgctccctcaatgttgtgatgaagagctacatgattttcctac-------------atggattgcctctatttttcttatgattttaagaaa 6943042  T
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaa 200  Q
    ||| |||||||||||| |||||||||||||||||||||| ||||||||| |||  |||||||||||||||| ||||| ||||||| | | ||||||||||    
T  6943041 acctattttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaattagatatacaaatcttctaaacgattttaaaa 6942942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 6954689 - 6954494
Alignment:
Q  5 ttgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaaccc 104  Q
    ||||||||||| | |||||||||||||||||||   |||  | | |||||||||||||||||||||||||||| ||| ||||||||||| || |||||||    
T  6954689 ttgttgctcccccgatgttgtgatgaagagctaaccggtgctgcaactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaaccc 6954590  T
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaa 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||  |||||||||||| | | | ||||| | ||||||||||||    
T  6954589 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaa 6954494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 20770550 - 20770720
Alignment:
Q  5 ttgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaaccc 104  Q
    ||||| |||||||||||||||||||||   | || || |  ||  ||||||| ||| |||||||||||  | | ||||||| ||||| |||| |||||      
T  20770550 ttgttactccctcaatgttgtgatgaatttccacttgataatcaaactctttgtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaactt 20770649  T
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||| ||||||||||||||||||||| || |||| || |||| | ||||||||||||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttat 20770720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 17369675 - 17369734
Alignment:
Q  116 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 17369734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 14749393 - 14749463
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 171  Q
    |||||||||||| | |||   |||| |||||||||||||||||| ||||||||| ||||||| ||||||||    
T  14749393 acccattttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaattag 14749463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 6954459 - 6954407
Alignment:
Q  220 tcctcgattgattccattgtgtttttgtaataatggtgatacattgatatttg 272  Q
    |||||||||||| ||| ||||||||| |||  |||||||||||||||||||||    
T  6954459 tcctcgattgatgccactgtgtttttctaaggatggtgatacattgatatttg 6954407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 19746762 - 19746715
Alignment:
Q  107 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    |||||||| |||||||||||| | |||||||||||||| |||||||||    
T  19746762 tttgttatatggcaaatgaagaagtttggagttcaagagtcttggact 19746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 34861959 - 34861892
Alignment:
Q  87 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    ||||||||| ||||||  | |||||||| |||||||||||||| ||||||||||  || |||||||||    
T  34861959 atgattttaggaaaactgaatttgttatatggcaaatgaaggagtttggagttcgggagtcttggact 34861892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 24254544 - 24254428
Alignment:
Q  57 ctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaa 156  Q
    |||| |||||||| ||||| | ||||||| |  || | |||| ||| ||||||||||| ||||| |||  ||||||||||||  || ||||||||||| |    
T  24254544 ctgtgttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T
Q  157 attccttaaaattagtt 173  Q
    |||| | ||||| ||||    
T  24254444 attcatcaaaatcagtt 24254428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 1986125 - 1985843
Alignment:
Q  5 ttgttgctccctcaatgttgtgatgaagagctacatggttttcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaaccc 104  Q
    ||||||||||||| || |||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  1986125 ttgttgctccctcgatattgtgatgaagatctacatggtgttccaactctttctgtgttgatggattgcctctatttttcttatgatttcaagaaaaccc 1986026  T
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaacaagattttaaaactca 204  Q
    |||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||  |||||||||||||||  ||||||| | ||||| |||||| |||    
T  1986025 attttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttatatgaatcttctagaagatattaaaattca 1985926  T
Q  205 cgag---------------acctattatcctcctcgattgattccattgtgtttttgtaataatggtgatacattgatatttg 272  Q
     | |               |||||||||||||||||||||| |||||||| |||||   | ||||||||||||||||||||||    
T  1985925 tgggttcaataatggtccaacctattatcctcctcgattgactccattgtatttttccgagaatggtgatacattgatatttg 1985843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 13417040 - 13416911
Alignment:
Q  46 tcctactctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaa 145  Q
    ||||||||||||| | ||||  ||||| || | ||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||| ||||     
T  13417040 tcctactctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagag 13416941  T
Q  146 tcttggactaaattccttaaaattagttat 175  Q
    ||||||  | ||||| ||||||||||||||    
T  13416940 tcttgggttgaattcgttaaaattagttat 13416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 18514910 - 18514775
Alignment:
Q  52 tctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 151  Q
    ||||||||| || ||||||||| | | ||||||||||||||| ||||||| ||||||  |||| ||| ||||| | |||||||||||| || | ||||||    
T  18514910 tctttctgttttaatggattgcatgtgtttttcttatgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagttgaaaactcttgg 18514811  T
Q  152 actaaattccttaaaattagttataccaatcttcaa 187  Q
    ||| |||||||||||||||||||||  |||||||||    
T  18514810 actcaattccttaaaattagttatatgaatcttcaa 18514775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 15572018 - 15571883
Alignment:
Q  52 tctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 151  Q
    ||||||||| || |||||||| || | ||||||||||||||| |||  |||||||||||| || |||||||||| ||| ||||||||| |||| ||||||    
T  15572018 tctttctgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T
Q  152 actaaattccttaaaattagttataccaatcttcaa 187  Q
      | |||||| ||||||||||||| | |||||||||    
T  15571918 gttcaattccataaaattagttattcaaatcttcaa 15571883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 19344693 - 19344577
Alignment:
Q  57 ctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaa 156  Q
    ||||||||||||| ||||| | ||||||| |  || | ||||| || ||||||||||| ||||| |||| ||||||||||||| || ||||||||||| |    
T  19344693 ctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T
Q  157 attccttaaaattagtt 173  Q
    ||| |||||||||||||    
T  19344593 atttcttaaaattagtt 19344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 14076677 - 14076748
Alignment:
Q  104 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14076748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 14386705 - 14386776
Alignment:
Q  104 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 19604559 - 19604464
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||||| |||||||| | ||||| || ||| |||| ||||| |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  19604559 tttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 660916 - 660847
Alignment:
Q  106 ttttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||||| ||||| |||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 22100467 - 22100563
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| ||||||| || ||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||| | ||  | ||||||||||||    
T  22100467 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 6864914 - 6864807
Alignment:
Q  67 ggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 166  Q
    |||||| |||||||||||| ||||||| ||  |||| ||||| || || |||  ||||||||||||||||||| |||| ||||||||| | |||||||||    
T  6864914 ggattgtctctatttttctcatgatttcaaacaaactcattt-gtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaa 6864816  T
Q  167 attagttat 175  Q
    | |||||||    
T  6864815 actagttat 6864807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 9807806 - 9807894
Alignment:
Q  87 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| ||||||||| |||| ||||| ||||| |||||||||||||||||| |||| |||||||  ||| |||||| ||||| ||||    
T  9807806 atgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttggatgaaactccttacaattaattat 9807894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 22063636 - 22063712
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||| | ||  | ||||||||||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttat 22063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 22080842 - 22080917
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    ||||||| ||||||| ||  |||| |||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  22080842 tttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22080917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 22021349 - 22021455
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||||||||||| | | ||||||| ||  | | |||||||||||||| ||||| ||||| |||| ||| | ||||||| |||||||||||||| |||| |    
T  22021349 ttgatggattgcatttgtttttctcatcttgtgaagaaaacccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattac 22021448  T
Q  162 ttaaaat 168  Q
    |||||||    
T  22021449 ttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 29881256 - 29881325
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||| || |||||||||||||| ||||||| ||| |||| ||||||||| ||||||||| |||||||||    
T  29881256 attttattgtttggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtta 29881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 20058153 - 20058057
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||| |||||||||||| |||  ||||||||||| ||| ||||| |||||||  ||||| |||| ||||||  | |||| |||||||||||||||    
T  20058153 tttttcgtatgattttaagcaaagtcattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttat 20058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 22028585 - 22028696
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||||||||||||| | ||||||| | |   | ||| |||||||||||||||| ||| |||||| ||| | ||||||| |||| ||||||||| |||| |    
T  22028585 ttgatggattgcctttgtttttctgaagtggtcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattac 22028684  T
Q  162 ttaaaattagtt 173  Q
    |||| |||||||    
T  22028685 ttaagattagtt 22028696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 22070085 - 22070160
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    ||||||| ||||||| ||   ||| |||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  22070085 tttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggact 22070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 19637287 - 19637217
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| |||| ||||||||||||||||||||||||||||| || |||| |    |||||||||||||||||    
T  19637287 attttattatatggcaaatgaaggaatttggagttcaagagtcgtggattcggctccttaaaattagttat 19637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 29454173 - 29454103
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||| ||||  |||| | ||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttat 29454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 29867236 - 29867305
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||| |||| |||||||||||| |||| || ||| |||| ||||||||| ||||||||| |||||||||    
T  29867236 attttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagtta 29867305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 12819986 - 12819918
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||| | ||||| |||| ||||||||||||| || |||| |||||| ||||||||||||| ||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 19351143 - 19351071
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||||||| | ||||| |||| ||||||||||||| | || |||||||||  |||||| ||||||||||    
T  19351143 acccattttgttttatggcagatgatggaatttggagttgaggagtcttggactccattcctcaaaattagtt 19351071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 19357906 - 19357978
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||| ||| | ||| | |||| |||||||||||||||||| ||||||||| ||||| | ||||||||||    
T  19357906 acccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagtt 19357978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 19722018 - 19722086
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||| | ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  19722018 attttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtt 19722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 20352089 - 20352165
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||| |||||||| || ||| |||||||||||||||||||| |||| || |||||| || |  ||||||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 29874517 - 29874581
Alignment:
Q  111 ttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||| |||||||||||| ||||||| ||| |||| |||||||||  ||| |||||||||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttat 29874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 29859454 - 29859536
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 187  Q
    |||| ||||| ||| | |||||| ||||||||||| |||| ||||||||   ||| |||||||||||||||  ||||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 16839494 - 16839397
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 159  Q
    |||||||| ||||| | ||||||| ||| | |||||||||| ||| ||||||| ||| | ||||  || | |||||||||||| ||||||||| ||||    
T  16839494 ttgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatt 16839397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 18952979 - 18952906
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18952979 acccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtta 18952906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 18983026 - 18982953
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18983026 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18982953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 18997672 - 18997599
Alignment:
Q  101 acccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||||||| | || ||||| |||||||||||||||||| |  | || |||||| | |||||||||||||||||    
T  18997672 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtta 18997599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 20338917 - 20339006
Alignment:
Q  98 aaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 187  Q
    ||||| |||||||| || ||| ||||||||||||| |||||| |||| ||||||||| || || || |||| ||||| |  |||||||||    
T  20338917 aaaactcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaactctttcaaatcagttacaataatcttcaa 20339006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 20374579 - 20374491
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 187  Q
    |||| |||||||| || ||| ||||||||||||||||||||  ||| || |||| | || |  |||||||||||||||  |||||||||    
T  20374579 aaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagttataataatcttcaa 20374491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 24002201 - 24002269
Alignment:
Q  107 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||| | ||||| |||||||| |  ||||||||||| ||||||||| |||| ||||| |||||||||    
T  24002201 tttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaattacttaagattagttat 24002269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 53774797 - 53774910
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||||||||||  | | ||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  162 ttaaaattagttat 175  Q
    ||||||||||||||    
T  53774897 ttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 3565701 - 3565814
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||| ||| ||||| | ||||||||||  || |||||||||| ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |    
T  3565701 ttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttc 3565800  T
Q  162 ttaaaattagttat 175  Q
    ||||||||||||||    
T  3565801 ttaaaattagttat 3565814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 8443567 - 8443454
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||||||| || || | ||||||||||||||| |||| ||| |||| |||||||||||| |||||||| ||||||||||| || ||||||| | ||||      
T  8443567 ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattat 8443468  T
Q  162 ttaaaattagttat 175  Q
    ||||||||||||||    
T  8443467 ttaaaattagttat 8443454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 11971078 - 11970982
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| |||||||| |  |||| ||||||||||| |||||||||||||||||||||||  |||| ||||||||| |||| |||| ||||||||||    
T  11971078 tttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttat 11970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 11981779 - 11981683
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| |||||||| |  |||| ||||||||||| |||||||||||||||||||||||  |||| || ||||||  ||| |||||||||||||||    
T  11981779 tttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttat 11981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 3557720 - 3557796
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||||||||||    
T  3557720 aaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 3561066 - 3560958
Alignment:
Q  67 ggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 166  Q
    ||||||||| | ||||||||||  ||  ||| ||||| ||||| |||||||||| |||||  ||||||| ||| |||| ||||||||| |||| ||||||    
T  3561066 ggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaa 3560967  T
Q  167 attagttat 175  Q
    |||||||||    
T  3560966 attagttat 3560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 837769 - 837842
Alignment:
Q  98 aaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 171  Q
    ||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||| | ||||  ||||||||||    
T  837769 aaaacccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggag 137  Q
    ||||||||||| || | ||||| |||||||||  | || |||||||||||||| |||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 6372439 - 6372521
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaat 181  Q
    ||||||||||| |||| |||||||||||||| | |||||||||||| |||| || | ||||   |||||||||||||| ||||    
T  6372439 aaacccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttataacaat 6372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 10464226 - 10464316
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgga 152  Q
    ||||||||||| || | ||||| |||||||||  | || |||||||||||||| |||||||||||||| ||||| | ||| || |||||||    
T  10464226 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttgga 10464316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 6392835 - 6392893
Alignment:
Q  116 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    |||||||||||||| ||||||||||| || ||||||| | ||||  |||||||||||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 10468042 - 10468078
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttca 141  Q
    |||||||||| |||||||||||||| |||||||||||    
T  10468042 attttgttatatggcaaatgaaggattttggagttca 10468078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 10482181 - 10482217
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttca 141  Q
    |||||||||| |||||||||||||| |||||||||||    
T  10482181 attttgttatatggcaaatgaaggattttggagttca 10482217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 14514874 - 14514982
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttatacc 178  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||      
T  14514874 tttttcttatgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatg 14514973  T
Q  179 aatcttcaa 187  Q
    |||||||||    
T  14514974 aatcttcaa 14514982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 18908885 - 18908811
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18908885 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18908811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 18920841 - 18920767
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18920841 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 18913632 - 18913559
Alignment:
Q  100 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    ||||||||||||||| ||| | |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  18913632 aacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18913559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 554450 - 554546
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| | |||||| ||  ||||||| || |||| ||||||||||  |||| ||||||| |||| ||||||||| |||| |||||||||||||||    
T  554450 tttttctcacgattttgagggaacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttat 554546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 25698507 - 25698561
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 159  Q
    |||||||||| ||||||||||  |||||||||||| |||| ||||||||||||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaatt 25698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 20975557 - 20975605
Alignment:
Q  104 cattttgttatttggcaaatgaaggaatttggagttcaagaatcttgga 152  Q
    ||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttgga 20975605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 25377072 - 25377144
Alignment:
Q  103 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||||| |||   |||||||| |||||||||||||| ||||||| | ||||  ||||||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttat 25377144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 20980604 - 20980665
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaa 166  Q
    |||||||||| ||| ||||||  |||||| ||||| |||| ||||||||||| |||||||||    
T  20980604 attttgttatatggaaaatgacagaatttagagttgaagagtcttggactaagttccttaaa 20980665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 29647633 - 29647744
Alignment:
Q  62 ttgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 161  Q
    |||||||||||||| | ||||||| |  || |||||||||| ||||||||||| ||||||||||  ||||||||| || || ||||||||||| ||||||    
T  29647633 ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattcc 29647732  T
Q  162 ttaaaattagtt 173  Q
    ||||||||||||    
T  29647733 ttaaaattagtt 29647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 18964952 - 18964830
Alignment:
Q  53 ctttctgtattgatggattgcctctatttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttgga 152  Q
    |||| |||||||||| ||||||| | |||| || ||||| || | ||||| |||||  |||| |||||||||||||||||||||||| |||| |||||||    
T  18964952 ctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactcttgga 18964853  T
Q  153 ctaaattccttaaaattagttat 175  Q
    || |||| ||||||||| |||||    
T  18964852 ctcaatttcttaaaatttgttat 18964830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 29597637 - 29597554
Alignment:
Q  90 attttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    |||| ||| |||| ||||||||||| ||||||||||  |||||||||||| || ||||||||||| ||||||||||||||||||    
T  29597637 atttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 29642348 - 29642427
Alignment:
Q  94 taagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtt 173  Q
    ||||||||| ||||| ||||| ||||||||||  ||||||||| || || ||||||||||| ||||||||||||||||||    
T  29642348 taagaaaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 24330975 - 24330900
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||| |||||||||| ||| | |||||||||||||| ||| |||| ||||||||| || |||||||| |||||||    
T  24330975 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 24330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 23086784 - 23086831
Alignment:
Q  107 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    |||||||| ||||| |||||||| |||||||||||||| |||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggact 23086831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 50645573 - 50645479
Alignment:
Q  87 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaat 181  Q
    |||||||| ||  ||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||||  ||||||||||||||| ||||    
T  50645573 atgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttataacaat 50645479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 4570927 - 4570998
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttata 176  Q
    |||||||||| |||||||||||| ||||||| ||| |||| ||||||||| |||| ||||||||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 4570998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 21855459 - 21855384
Alignment:
Q  99 aaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||| |||||||||| ||| | |||||||||||||| ||| |||| ||||||||| || |||||||| |||||||    
T  21855459 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 4015032 - 4014966
Alignment:
Q  108 ttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    ||||||| ||||| |||||| ||||||| ||| |||| ||||||||| ||||||||||| |||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtta 4014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 39379131 - 39379061
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| |||| ||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||| ||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagttat 39379061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 10218985 - 10219054
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagtta 174  Q
    |||||||| | |||||||||||| |||||||  || |||| ||||||||| |||| ||||||||||||||    
T  10218985 attttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtta 10219054  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 17560843 - 17560761
Alignment:
Q  105 attttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 187  Q
    |||| ||||| ||||| |||||| ||||||| ||| |||| ||||||||   |||||||| ||||||||||| | ||||||||    
T  17560843 atttggttatatggcacatgaagaaatttggggttgaagattcttggacaccattccttataattagttataacgatcttcaa 17560761  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 15961233 - 15961298
Alignment:
Q  110 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||| ||| |||||||| ||||||||| | |||||||||||||| ||||| ||||| ||| ||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaattctttaaagttaattat 15961298  T

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Target: scaffold0867 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 4765 - 4669
Alignment:
Q  79 tttttcttatgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    ||||||| ||||||| || ||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||| | ||  | ||||||||||||    
T  4765 tttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 4669  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 42846513 - 42846459
Alignment:
Q  87 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttca 141  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||||||||||    
T  42846513 atgattttgaggaaacccattttgttatttggcaaatgaaggattttggagttca 42846459  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 27618473 - 27618574
Alignment:
Q  87 atgattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttca 186  Q
    ||||||||||| |||| ||||||||||| ||| ||||| | ||| | |||||| |||| ||||||||| | || |||||| ||||||||   ||||||||    
T  27618473 atgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagttatcagaatcttca 27618572  T
Q  187 ac 188  Q
    ||    
T  27618573 ac 27618574  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 29390288 - 29390340
Alignment:
Q  107 tttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 159  Q
    |||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaatt 29390340  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 11339505 - 11339435
Alignment:
Q  89 gattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 159  Q
    ||||| ||| |||| || |||||||| ||||||||||  || |||||| ||||||||||||||||| ||||    
T  11339505 gatttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaatt 11339435  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 11345187 - 11345117
Alignment:
Q  89 gattttaagaaaacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaatt 159  Q
    ||||| ||| |||| || |||||||| ||||||||| | || |||||| ||||||||||||||||| ||||    
T  11345187 gatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaatt 11345117  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 11338644 - 11338600
Alignment:
Q  107 tttgttatttggcaaatgaaggaatttggagttcaagaatcttgg 151  Q
    |||||||| ||||||||||| || |||||| ||||||||||||||    
T  11338644 tttgttatatggcaaatgaaagagtttggatttcaagaatcttgg 11338600  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 3625740 - 3625804
Alignment:
Q  111 ttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||| |||||||||||| ||||||| ||| |||| ||||||||| |||| |||||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttat 3625804  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 25901351 - 25901279
Alignment:
Q  103 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||||| ||| |||||||||| ||| |||||||||| ||||||| | ||||  | ||||||||||||    
T  25901351 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25901279  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 25915369 - 25915297
Alignment:
Q  103 ccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttat 175  Q
    |||||||||||| ||| |||||||||| ||| |||||||||| ||||||| | ||||  | ||||||||||||    
T  25915369 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25915297  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 3837904 - 3837958
Alignment:
Q  100 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    ||||||||||||| | ||| ||||||| || |||||||||||||| |||||||||    
T  3837904 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 3837958  T

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Target: scaffold0354 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 7474 - 7529
Alignment:
Q  116 tggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattag 171  Q
    |||||||||||||||||||||||| | || ||||||  | ||||||||||||||||    
T  7474 tggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

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Target: scaffold0267 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 13385 - 13439
Alignment:
Q  100 aacccattttgttatttggcaaatgaaggaatttggagttcaagaatcttggact 154  Q
    ||||||||||||| | ||| ||||||| || |||||||||||||| |||||||||    
T  13385 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggact 13439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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