View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_35 (Length: 281)
Name: NF11271_low_35
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39313466 - 39313661
Alignment:
| Q |
1 |
acaaatgagatattggattcataacataa-cattgtaatgaaaacattgaagttaaacagaatttaccttacctgaatatactctagaagtgatgcaaga |
99 |
Q |
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| T |
39313466 |
acaaatgagatattggattcataacataaacattgtaatgaaaacattgaagttaaaaagaatttaccttacctgaatatactatagaggtgatgcaaga |
39313565 |
T |
|
| Q |
100 |
acaacacagtnnnnnnntgcatgcccatttggtaaaaacaagtcccatcaagaatgctagctagcttcaaaagcaccaagaaagcaaaaatgcaga |
195 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39313566 |
acaacacagtaaaaaaatgaatgcccatttggtaaaaacaagtcccatcaagaatgctagctagcttcaaaagcaccaagaaagcaaaaatgcaga |
39313661 |
T |
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