View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_38 (Length: 249)
Name: NF11271_low_38
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 36570881 - 36570713
Alignment:
| Q |
48 |
ttcaaaattacagaaataaagggtttatcaatgcagatctgaagaacacaatatcatcaaatgttcatcaggaaataaggagtttttggtgaaaatcaat |
147 |
Q |
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| T |
36570881 |
ttcaaaattccagaaataaagggtttatcaatgcagatctgaagaacacaatatcatcaaatgttcatccggaaataaggagtttttggtgaaaatcaat |
36570782 |
T |
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| Q |
148 |
tttaattgaatgggtagtagaaacaaggagttgtggctgctgataatttttgccttttcagttggtggt |
216 |
Q |
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| T |
36570781 |
tttaattgaatgggtagtagaaacaaggagttgtggatgctgataatgtttgctttttcagttggtggt |
36570713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 52603725 - 52603896
Alignment:
| Q |
45 |
agattcaaaattacagaaataaagggtttatcaatgcagatctgaagaacacaatatcatcaaatgttcatcaggaaataaggagtttttggtgaaaatc |
144 |
Q |
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| T |
52603725 |
agattcaaaattccagaaataaaggttttatcaatgtagatctgaagaacacaatatcatcaaatgttcatcaggaaagaaggagtttttggcgaaaatc |
52603824 |
T |
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| Q |
145 |
aattttaattgaatgggtagtagaaacaaggagttgtggctgctgataatttttgccttttcagttggtggt |
216 |
Q |
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| T |
52603825 |
aattttaattgaatgggtagtagaaacaaggagttgtggctgttgataatgtttgccttttcagttggtggt |
52603896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 32453695 - 32453637
Alignment:
| Q |
157 |
atgggtagtagaaacaaggagttgtggctgctgataatttttgccttttcagttggtgg |
215 |
Q |
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| T |
32453695 |
atgggtggtagaaacaaggagttgctgctgctgataatgcttgccttttcagttggtgg |
32453637 |
T |
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