View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_39 (Length: 247)
Name: NF11271_low_39
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 36547432 - 36547217
Alignment:
| Q |
18 |
cttcatacatttagcgagagatgatatgtggtattaaagtactatttgaaataacattaataaatcgagggaagaagagagtgannnnnnnnngagtgca |
117 |
Q |
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| T |
36547432 |
cttcatacatttagcgagagatgatatgtggtattaaagtactatttgaaataacattaataaatcgagggaagaagagagtgattttttttttagtgca |
36547333 |
T |
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| Q |
118 |
ggtattcgaagtgggttgaaaatttgggctcatcaaaatgttcaaagtgctgtgttcggagaatatgttgaaataacattaataacattaacaaatgcaa |
217 |
Q |
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| T |
36547332 |
gatattcgaagtgggttgaaaatttgggctcgttaaaatgttcaaagtgttgtgttcgaagaatatgttgaaataacattaataacattaacaaatgcaa |
36547233 |
T |
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| Q |
218 |
taaatcgtcttctgtg |
233 |
Q |
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| T |
36547232 |
taaatcgtcttgtgtg |
36547217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 36547191 - 36547139
Alignment:
| Q |
111 |
gagtgcaggtattcgaagtgggttgaaaatttgggctcatcaaaatgttcaaa |
163 |
Q |
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| T |
36547191 |
gagtgcaggtgttcgaagtgagttgaaaatttgggctcgtcaaaatgttcaaa |
36547139 |
T |
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