View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_low_4 (Length: 768)

Name: NF11271_low_4
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_low_4
NF11271_low_4
[»] chr7 (1 HSPs)
chr7 (133-750)||(2451711-2452330)
[»] chr2 (8 HSPs)
chr2 (268-361)||(29651760-29651854)
chr2 (268-362)||(5788875-5788970)
chr2 (268-335)||(29977364-29977432)
chr2 (174-237)||(6912418-6912481)
chr2 (286-361)||(40599657-40599731)
chr2 (268-361)||(3395456-3395550)
chr2 (175-237)||(13439262-13439324)
chr2 (189-256)||(20444194-20444263)
[»] scaffold0159 (1 HSPs)
scaffold0159 (268-362)||(33248-33343)
[»] chr1 (4 HSPs)
chr1 (268-342)||(43387103-43387178)
chr1 (268-340)||(47783156-47783229)
chr1 (284-342)||(22636339-22636397)
chr1 (308-361)||(3838177-3838230)
[»] chr5 (2 HSPs)
chr5 (268-359)||(38015936-38016028)
chr5 (202-256)||(19320287-19320343)
[»] chr4 (5 HSPs)
chr4 (268-359)||(13228683-13228775)
chr4 (308-361)||(52543041-52543094)
chr4 (294-342)||(48683181-48683229)
chr4 (284-335)||(36697772-36697823)
chr4 (284-342)||(50158196-50158254)
[»] chr6 (4 HSPs)
chr6 (268-342)||(1599690-1599765)
chr6 (217-335)||(31737164-31737287)
chr6 (269-358)||(16707299-16707389)
chr6 (268-333)||(33350306-33350372)
[»] chr3 (1 HSPs)
chr3 (268-342)||(50331962-50332037)
[»] chr8 (5 HSPs)
chr8 (286-335)||(17871245-17871294)
chr8 (268-340)||(42797289-42797362)
chr8 (289-342)||(45247787-45247840)
chr8 (174-230)||(12159333-12159389)
chr8 (308-362)||(40260479-40260533)
[»] scaffold0216 (1 HSPs)
scaffold0216 (268-335)||(29174-29242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (289-362)||(95774-95846)


Alignment Details
Target: chr7 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 133 - 750
Target Start/End: Complemental strand, 2452330 - 2451711
Alignment:
Q  133 tcatcataatgttgagatattcattcacgggatcttacgttaagtttaatgatcatattagactaagagaatccacataaatgaatttgacaccacatct 232  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  2452330 tcatcataatgttgggatattcattcgcgggatcttacgttaagtttaatgatcatattagactaagagaattcacatagatgaatttgacaccacatct 2452231  T
Q  233 tcaccaaaccttaaggtattaggtttgactcaaaacacttatatgttttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacat 332  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2452230 tcaccaaaccttaaggcattaggtttgagtcaaaacacttatatgttttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacat 2452131  T
Q  333 taaaatctcttctccaagtatgagactctcgacaaccgggatccatcactgggaatcaattatgcttcccaacaaagttaaaccgagatatg-taccatc 431  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  2452130 taaaatctcttctccaagtatgagactctcgacaaccggggtccatcactgggaatcaattatgcttcccaacaaagttaaaccgagatatgttaccatt 2452031  T
Q  432 gttggactttattagggagtcaacacttatgtggatactcattggacagaaagaaaccacatgtatccatatctaatccacgtttgccacaaaatatttt 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    ||||||||||||    
T  2452030 gttggactttattagggagtcaacacttatgtggatactcattggacagaaagaaatcacatgtatccatatctaatccacgctcagtacaaaatatttt 2451931  T
Q  532 aaatatgacaaaattctagttcgtgtttggcatagatatccatactagtttaacatatgaggaaagtagtagcatgcatagacaattaaagcatggtaaa 631  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2451930 aaatatgacaaaattctagttcgtgtttggcatagatatccataatagtttaacatatgaggaaagtagtagcatgcatagacaattaacgcatggtaaa 2451831  T
Q  632 catctaagagatattatcaagtggctaattggtatgttagtgttattctct-tttgccaggacttgaaacttggacatttaaactccttaaccgttaact 730  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2451830 catctaagggatattatcaagtggctaattggtatgttagtgttattctctctttgccaggacttgaaacttggacatttaaactccttaaccgttaact 2451731  T
Q  731 taaaagctgagccacctaac 750  Q
    ||||||||||||||||||||    
T  2451730 taaaagctgagccacctaac 2451711  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 29651854 - 29651760
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactct 361  Q
    |||||| ||||| ||| |||| |||| ||||||||||||||||||||||||||||| |||| ||||||| ||| ||||  ||||||||| |||||    
T  29651854 cacttagatgttgttcaacatctactcttgcattcaatgtgaaactttaactcacatttgacacattaacatcacttcctcaagtatgaaactct 29651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 5788875 - 5788970
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactctc 362  Q
    |||||||||||| ||| |||| |||| ||||||||||||||  | ||||||||||| |||| ||||||| ||||||||   |||||||||||||||    
T  5788875 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctc 5788970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 29977364 - 29977432
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaa 335  Q
    ||||||||||||| || ||||  ||| |||||||||||||| |||||||||| |||||||| |||||||    
T  29977364 cacttatatgtttatcaacatccactcttgcattcaatgtggaactttaacttacacttgacacattaa 29977432  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 6912481 - 6912418
Alignment:
Q  174 aagtttaatgatcatattagactaagagaatccacataaatgaatttgacaccacatcttcacc 237  Q
    |||||| || || ||||||||||||||||||| ||| || ||| ||||||||||||| ||||||    
T  6912481 aagtttcatcataatattagactaagagaatcaacacaagtgattttgacaccacattttcacc 6912418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 40599657 - 40599731
Alignment:
Q  286 atttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactct 361  Q
    ||||||| ||||||||| ||  ||||||||||| |||||| | ||||||| ||||||||  |||||||||||||||    
T  40599657 atttactcttgcattca-tgcaaaactttaacttacacttaacacattaacatctcttcctcaagtatgagactct 40599731  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 3395456 - 3395550
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactct 361  Q
    ||||||||||||| || |||| |||| |||||||||| |||  | |||||||||||| ||| ||||||| |||||| |   ||||||||||||||    
T  3395456 cacttatatgtttctcaacatctactattgcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagtatgagactct 3395550  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 13439262 - 13439324
Alignment:
Q  175 agtttaatgatcatattagactaagagaatccacataaatgaatttgacaccacatcttcacc 237  Q
    ||||| || |||| ||||||||||||||||||| | || ||| ||||||||||||| ||||||    
T  13439262 agtttgatcatcacattagactaagagaatccatacaagtgagtttgacaccacattttcacc 13439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 20444263 - 20444194
Alignment:
Q  189 attagactaagagaatccacataaatgaatttgacaccacatcttca--ccaaaccttaaggtattaggt 256  Q
    |||||| ||||||||||||| ||| ||| |||||||||| |||||||  | ||||||||||| |||||||    
T  20444263 attagagtaagagaatccacttaagtgagtttgacaccatatcttcatcctaaaccttaaggcattaggt 20444194  T

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Target: scaffold0159 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 33248 - 33343
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactctc 362  Q
    |||||||||||| ||| |||| |||| ||||||||||||||  | ||||||||||| |||| ||||||| ||||||||   |||||||||||||||    
T  33248 cacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgagactctc 33343  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 43387103 - 43387178
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    ||||||||||||| || |||| |||| |||||||||||||| || |||||||||||||||| ||||||| ||||||    
T  43387103 cacttatatgtttctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctct 43387178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 47783229 - 47783156
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatct 340  Q
    |||||||||||| ||  ||| ||||| |||||  ||||||||||||||||||||||||||| ||||||| ||||    
T  47783229 cacttatatgttgttaaacaattactcttgcagccaatgtgaaactttaactcacacttgacacattaacatct 47783156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 22636339 - 22636397
Alignment:
Q  284 acatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    |||| |||| |||||||||| || ||| |||||||||||||||||| ||||| ||||||    
T  22636339 acatctactcttgcattcaaagtcaaattttaactcacacttgaaaaattaacatctct 22636397  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 3838177 - 3838230
Alignment:
Q  308 aaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactct 361  Q
    ||||||||||| |||||||| ||||||| ||||| ||  |||||||||||||||    
T  3838177 aaactttaacttacacttgacacattaacatctcgtcctcaagtatgagactct 3838230  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 38015936 - 38016028
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagact 359  Q
    ||||||||||||  || |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| |||||| |  |||||||||||||    
T  38015936 cacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagtatgagact 38016028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 19320287 - 19320343
Alignment:
Q  202 aatccacataaatgaatttgacaccacatcttcacc--aaaccttaaggtattaggt 256  Q
    |||||||| |||||||||||||||||||||||| ||  ||||||||||  |||||||    
T  19320287 aatccacacaaatgaatttgacaccacatcttcgccctaaaccttaagacattaggt 19320343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 13228775 - 13228683
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagact 359  Q
    ||||||||||||| || |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| |||||| |   ||||||||||||    
T  13228775 cacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgagact 13228683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 52543041 - 52543094
Alignment:
Q  308 aaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactct 361  Q
    ||||||||||| |||||||| ||||||| ||||||||  |||||||||||||||    
T  52543041 aaactttaacttacacttgacacattaatatctcttcctcaagtatgagactct 52543094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 48683229 - 48683181
Alignment:
Q  294 ttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    |||| |||||||||||||||||||||||| |||| ||||||| ||||||    
T  48683229 ttgctttcaatgtgaaactttaactcacatttgacacattaacatctct 48683181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 36697823 - 36697772
Alignment:
Q  284 acatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaa 335  Q
    |||| ||||||||||| ||||||| |||||||||||||| |||| |||||||    
T  36697823 acatctacttttgcatccaatgtggaactttaactcacatttgatacattaa 36697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 50158254 - 50158196
Alignment:
Q  284 acatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    |||| |||| ||||||  ||||||||||||||||||| |||||| ||||||| ||||||    
T  50158254 acatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctct 50158196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 1599765 - 1599690
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    ||||||||||||| || |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||||    
T  1599765 cacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 1599690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 31737164 - 31737287
Alignment:
Q  217 atttgacaccacatcttcacc--aaaccttaaggtattaggttt--gactcaaaacacttatatgtt-ttcgacatttacttttgcattcaatgtgaaac 311  Q
    ||||||||||||||||||||   ||| ||||| ||||||||| |  || ||| | ||||| |||||| ||| |||| |||| |||||| ||||||||||     
T  31737164 atttgacaccacatcttcacactaaatcttaatgtattaggtatatgaatcatatcacttgtatgttgttcaacatctactcttgcatccaatgtgaaat 31737263  T
Q  312 tttaactcacacttgaaacattaa 335  Q
    ||||||||||| |||| |||||||    
T  31737264 tttaactcacaattgacacattaa 31737287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 16707389 - 16707299
Alignment:
Q  269 acttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagac 358  Q
    |||||||||||| || ||||||||| || | | ||||||||||||| |||||||  |||| ||||||| |||| || | ||||||||||||    
T  16707389 acttatatgtttatcaacatttactcttacttccaatgtgaaacttcaactcacgtttgacacattaacatcttttattcaagtatgagac 16707299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 33350306 - 33350372
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacatt 333  Q
    ||||||||| || ||| ||||||||| |||||||||||||| |||||||| | |||||||| |||||    
T  33350306 cacttatatattgttcaacatttactattgcattcaatgtggaactttaaataacacttgacacatt 33350372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 50331962 - 50332037
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    ||||||||||||| || |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||||    
T  50331962 cacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 50332037  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 17871294 - 17871245
Alignment:
Q  286 atttacttttgcattcaatgtgaaactttaactcacacttgaaacattaa 335  Q
    ||||||| || |||||||||| |||||||||||||||||||| |||||||    
T  17871294 atttactcttacattcaatgtaaaactttaactcacacttgacacattaa 17871245  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 42797289 - 42797362
Alignment:
Q  268 cacttatatgttt-tcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatct 340  Q
    ||||||||||||| || |||| |||| ||||||||||||||  | |||||||||||||||| ||||||| ||||    
T  42797289 cacttatatgtttctcaacatatactattgcattcaatgtgttattttaactcacacttgacacattaacatct 42797362  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 45247840 - 45247787
Alignment:
Q  289 tacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 342  Q
    ||||||||||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  45247840 tacttttgcattcaacgtagaactttaactcacacttgacatattaaaatctct 45247787  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 12159389 - 12159333
Alignment:
Q  174 aagtttaatgatcatattagactaagagaatccacataaatgaatttgacaccacat 230  Q
    |||||| || |||||||||||||||||||||| ||| || ||| |||||||||||||    
T  12159389 aagtttgatcatcatattagactaagagaatcaacacaagtgattttgacaccacat 12159333  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 40260533 - 40260479
Alignment:
Q  308 aaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactctc 362  Q
    ||||||||||| | |||||| ||||||| ||||||||  ||||||||||||||||    
T  40260533 aaactttaacttatacttgacacattaacatctcttcctcaagtatgagactctc 40260479  T

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Target: scaffold0216 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 29174 - 29242
Alignment:
Q  268 cacttatatgtt-ttcgacatttacttttgcattcaatgtgaaactttaactcacacttgaaacattaa 335  Q
    |||||||||||| ||  |||| ||||||||||| ||||||| |||||||||||||| |||| |||||||    
T  29174 cacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaa 29242  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 95774 - 95846
Alignment:
Q  289 tacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctcttctccaagtatgagactctc 362  Q
    ||||||||||| |||| ||||||||||| ||| |||||  ||||||| |||||  || ||||||||||||||||    
T  95774 tacttttgcatccaatctgaaactttaagtcaaacttg-tacattaacatctccccttcaagtatgagactctc 95846  T

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