View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_40 (Length: 242)
Name: NF11271_low_40
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_40 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 14228399 - 14228499
Alignment:
| Q |
142 |
tacgtacatgccctcaaagagaccataaggtctataaagctctatcgcggtctccatctttgtgccctagaaaagcagagcaataaaataagagtaaata |
241 |
Q |
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| T |
14228399 |
tacgtacatgccctcaaagagaccataaggtctataaagctctatcgcggtttccatctttgtgccctagaaaagcagagcaataaaataagagtaaata |
14228498 |
T |
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| Q |
242 |
a |
242 |
Q |
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| T |
14228499 |
a |
14228499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 14222026 - 14222126
Alignment:
| Q |
140 |
tgtacgtacatgccctcaaagagaccataaggtctataaagctctatcgcggtctccatctttgtgccctagaaaagcagagcaataaaataagagtaaa |
239 |
Q |
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| T |
14222026 |
tgtacatacatgccctcaaagagaccatatggtctgtaaagctctatcgcaatctccatctttgtgccctagaaaagtagagcaatcaaataagagtaaa |
14222125 |
T |
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| Q |
240 |
t |
240 |
Q |
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| T |
14222126 |
t |
14222126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14228086 - 14228123
Alignment:
| Q |
20 |
tggagcattgcctaatacccaacatatagtattatgat |
57 |
Q |
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| T |
14228086 |
tggagcattgcctaatacccaacatatagtattatgat |
14228123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 14228306 - 14228343
Alignment:
| Q |
49 |
tattatgattacgagcgatcatattaatacagtttgat |
86 |
Q |
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| T |
14228306 |
tattatgattacgagcgatcatattaatacagtttgat |
14228343 |
T |
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