View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_low_44 (Length: 236)

Name: NF11271_low_44
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_low_44
NF11271_low_44
[»] chr3 (3 HSPs)
chr3 (55-223)||(20622572-20622739)
chr3 (77-129)||(17143529-17143581)
chr3 (77-198)||(1771013-1771134)
[»] chr6 (5 HSPs)
chr6 (77-216)||(33597033-33597173)
chr6 (77-216)||(11087674-11087815)
chr6 (77-129)||(16138079-16138131)
chr6 (77-125)||(17380308-17380356)
chr6 (108-216)||(31423649-31423757)
[»] chr7 (1 HSPs)
chr7 (60-216)||(26762674-26762830)
[»] chr2 (3 HSPs)
chr2 (73-150)||(3586601-3586679)
chr2 (77-138)||(23493891-23493952)
chr2 (61-161)||(24500012-24500112)
[»] chr8 (1 HSPs)
chr8 (73-140)||(21416973-21417039)
[»] chr1 (2 HSPs)
chr1 (77-150)||(26977986-26978059)
chr1 (79-198)||(22414965-22415085)
[»] scaffold0291 (1 HSPs)
scaffold0291 (77-192)||(8361-8476)
[»] chr5 (1 HSPs)
chr5 (77-128)||(32418266-32418317)
[»] scaffold0074 (1 HSPs)
scaffold0074 (72-130)||(35511-35569)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 20622739 - 20622572
Alignment:
Q  55 tactaattgttctaaactggttagaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactc 154  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||  ||||||||||    
T  20622739 tacttattgttttaaactg-ttagaagactaatcacacgttaacatgtggcataacttacaccgctttaaggctccgcgcctgaggtagcacgccaactc 20622641  T
Q  155 aagtgcatcctgctacacataagcgcgcccctgcgcgaggatcaacctacacatgtcctctatcgcttc 223  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| ||||||| |||||| |||||||||    
T  20622640 aagtgcatcctgctacgcataagtgcgcccctgcgtgaggatcaccctacacgtgtcctttatcgcttc 20622572  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 17143529 - 17143581
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctc 129  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  17143529 agaagaccaattacacgttaacacgtgacataacttacaccgccttaaggctc 17143581  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 1771134 - 1771013
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacataa 176  Q
    ||||||| ||||||||||||||| | |||||||||||||||| ||||| |||| ||| |||||  || | | || ||||||||||   ||| ||| | ||    
T  1771134 agaagaccaatcacacgttaacacgagacataacttacaccgtcttaacgctctgcgtttgagcgaacatgtcagctcaagtgcactgtgccacatagaa 1771035  T
Q  177 gcgcgcccctgcgcgaggatca 198  Q
    | ||||||| ||||||||||||    
T  1771034 gtgcgcccccgcgcgaggatca 1771013  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 33597173 - 33597033
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacataa 176  Q
    ||||||| ||| |||| || ||| ||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||  | ||| |||||| |    
T  33597173 agaagaccaataacacattgacacgtgacataacttacaccaccttaaggctccgcgcctgagggaacacgccaactcaagtgctccgtgccacacatga 33597074  T
Q  177 gcgcgcc-cctgcgcgaggatcaacctacacatgtcctcta 216  Q
    | ||||| || |||||||| ||| ||||||  |||||||||    
T  33597073 gtgcgcctcccgcgcgagggtcatcctacatgtgtcctcta 33597033  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 11087815 - 11087674
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataa-cttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacata 175  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||| |||||||||||||||| |||| || || |||||| || | ||   ||| ||||| |    
T  11087815 agaagaccaatcacacgttaacacgtggcataaacttacaccgtcttaaggctccgcgctcgagggaacactccaacttaaatacactgtgccacacaga 11087716  T
Q  176 agcgc-gcccctgcgcgaggatcaacctacacatgtcctcta 216  Q
    ||||| |||||   |||||||||| ||||||| |||||||||    
T  11087715 agcgcggcccccatgcgaggatcaccctacacgtgtcctcta 11087674  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 16138131 - 16138079
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctc 129  Q
    ||||||| || |||| ||||||||||| ||||||||| |||||||||||||||    
T  16138131 agaagaccaaccacatgttaacatgtggcataacttaaaccgccttaaggctc 16138079  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 17380356 - 17380308
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaag 125  Q
    ||||||| |||| |||||| ||||||| | |||||||||||||||||||    
T  17380356 agaagaccaatcccacgttgacatgtggcctaacttacaccgccttaag 17380308  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 31423649 - 31423757
Alignment:
Q  108 aacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacataagcgcgcccctgcgcgaggatcaacctacaca 207  Q
    |||||||||||  |||||| |||||  |||||  ||||||||| || || |||| | ||| ||||| || |||| |||||| ||||||||| ||||||      
T  31423649 aacttacaccgttttaaggttccgcatttgagagaatacgccagcttaaatgcaccgtgccacacagaaacgcgtccctgcacgaggatcaccctacatg 31423748  T
Q  208 tgtcctcta 216  Q
    |||||||||    
T  31423749 tgtcctcta 31423757  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 26762674 - 26762830
Alignment:
Q  60 attgttctaaactggttagaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtg 159  Q
    |||||| ||||| ||| | ||||| ||||||||||| ||| |||   ||||||||||||||||||||||| ||   ||||| || |||||||||||||||    
T  26762674 attgttttaaaccggtcataagaccaatcacacgttgacacgtggtctaacttacaccgccttaaggctcagcctctgagggaacacgccaactcaagtg 26762773  T
Q  160 catcctgctacacataagcgcgcccctgcgcgaggatcaacctacacatgtcctcta 216  Q
    || |  || ||||   ||| ||||||||||||||||||| | ||||  |||||||||    
T  26762774 caccacgccacaccgtagcacgcccctgcgcgaggatcaccatacaagtgtcctcta 26762830  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 3586679 - 3586601
Alignment:
Q  73 ggttagaagactaatcacacgttaacatgtgacataa-cttacaccgccttaaggctccgcgcttgaggtaatacgcca 150  Q
    ||||||||||| ||||||||||||||| ||| ||||| |||||| || ||||||||||||||||||||| || ||||||    
T  3586679 ggttagaagaccaatcacacgttaacacgtggcataaacttacatcgtcttaaggctccgcgcttgagggaacacgcca 3586601  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 23493952 - 23493891
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttga 138  Q
    ||||||| |||| |||||| ||| ||| | |||||||||||||||| |||||||||||||||    
T  23493952 agaagaccaatcgcacgttgacacgtggcctaacttacaccgccttcaggctccgcgcttga 23493891  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 24500112 - 24500012
Alignment:
Q  61 ttgttctaaactggttagaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgc 160  Q
    |||||||  |||||| ||||||| ||||||| ||| ||| ||  |||||||||||||| |||||||||| || | ||| | || ||| ||||||||||||    
T  24500112 ttgttcttgactggtcagaagaccaatcacatgttgacacgtagcataacttacaccgacttaaggctctgctcctgaagaaacacgtcaactcaagtgc 24500013  T
Q  161 a 161  Q
    |    
T  24500012 a 24500012  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 21417039 - 21416973
Alignment:
Q  73 ggttagaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgagg 140  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||| || |||||    
T  21417039 ggttagaagaccaatcacacgtta-catgtggcataacttgcaccgccttaaggctccgtgcctgagg 21416973  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 26978059 - 26977986
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgcca 150  Q
    ||||||| ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||| || ||||||    
T  26978059 agaagaccaatcacacgctgacatgtggcctaacttacaccgccttaaggcttcgcgcctgaggaaacacgcca 26977986  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 22415085 - 22414965
Alignment:
Q  79 aagactaatcacacgttaacatgtgacataa-cttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacataag 177  Q
    ||||| ||||||| ||| ||| ||| ||||| |||||||| |||||||||||||| | ||| | || ||| || ||||||||||    || |||||||||    
T  22415085 aagaccaatcacatgttgacacgtggcataaacttacacctccttaaggctccgcacctgaaggaacacgtcagctcaagtgcactgcgccacacataag 22414986  T
Q  178 cgcgcccctgcgcgaggatca 198  Q
    ||| |||||||| ||||||||    
T  22414985 cgcacccctgcgtgaggatca 22414965  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 8361 - 8476
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctccgcgcttgaggtaatacgccaactcaagtgcatcctgctacacataa 176  Q
    ||||||| ||||||||||||||| |||  ||||| |||| ||||||||||||| | |   |||| || |||||| |||||||||||   || ||||||||    
T  8361 agaagaccaatcacacgttaacacgtggtataacctacatcgccttaaggctctgtgtcagagggaacacgccagctcaagtgcatagagccacacataa 8460  T
Q  177 gcgcgcccctgcgcga 192  Q
    | ||||||| ||||||    
T  8461 gtgcgcccccgcgcga 8476  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 32418266 - 32418317
Alignment:
Q  77 agaagactaatcacacgttaacatgtgacataacttacaccgccttaaggct 128  Q
    ||||||| |||| |||||| ||| ||||||||||||||||||||||||||||    
T  32418266 agaagaccaatcgcacgttgacacgtgacataacttacaccgccttaaggct 32418317  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 35569 - 35511
Alignment:
Q  72 tggttagaagactaatcacacgttaacatgtgacataacttacaccgccttaaggctcc 130  Q
    |||| ||||||||||||| |||||||||||||  ||| ||| || ||||||||||||||    
T  35569 tggtcagaagactaatcatacgttaacatgtggtatatcttgcatcgccttaaggctcc 35511  T

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