View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_46 (Length: 230)
Name: NF11271_low_46
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_46 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36354434 - 36354200
Alignment:
| Q |
1 |
cgaaactaatgcattctagttgnnnnnnncatccttgattttctcttcttcacacgttttggtcgacctcgac----agcattgtggcatcttcctattg |
96 |
Q |
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| T |
36354434 |
cgaaactaatgcattctagttgtttttttcatccttgattttctcttcttcacacgttttggtcgacctcgacgtacagcattgtggcatcctcctattg |
36354335 |
T |
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| Q |
97 |
gacaaca-tttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagatacaacaatagctacta |
195 |
Q |
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| T |
36354334 |
gacaacactttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagatacaacaatagctacta |
36354235 |
T |
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| Q |
196 |
tttctgggaatatttttctttcccagttcatcttt |
230 |
Q |
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| T |
36354234 |
tttctgggaatatttttctttcccagttcatcttt |
36354200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 36355557 - 36355486
Alignment:
| Q |
159 |
tttccatatctatggcaagatacaacaatagctactatttctgggaatatttttctttcccagttcatcttt |
230 |
Q |
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| T |
36355557 |
tttccatatctatggccagatacaacaatagctactactcttgggaaaatttctctatcccaattcatcttt |
36355486 |
T |
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