View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_5 (Length: 735)
Name: NF11271_low_5
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 719
Target Start/End: Complemental strand, 15163219 - 15162513
Alignment:
| Q |
18 |
ctatttattcggttgatgaatgtgaagaatatcatttactttccgctattcggtggttgcatgatttgcagctatagagtaacatttgagcttcattcta |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
15163219 |
ctatttattcggttgatgaaggtgaagaatatcatttactttccgctattcggtggtttcgtgatttgcagctatagagtaacatttgagcttcattcta |
15163120 |
T |
|
| Q |
118 |
agtgagagttgatagttttcacttcacaaaggaagatgtgacggagtttagcattattagatttgattgtactattgtagacatttgtcctctctttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15163119 |
agtgagagttgatagttttcacttcacaaaggaagatgtgacggagtttagcattattagatttgattatactattgtagacatttgtcctctctttatt |
15163020 |
T |
|
| Q |
218 |
ttaataactctaattttgagttttctaaaagacaagcaaatagagtggctcaggctttatcaaaggtgaccacatctctatctctatagaaatttgtttc |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15163019 |
ttaataactctatttttgagttttctaaaagacaagcaaatagagtggctcaggctttatcaaaggtgaccacatctctatctctatagaaatttgtttc |
15162920 |
T |
|
| Q |
318 |
aaattgtgtttactgatcttaaagtatagtatcatcagaatttcagattgaattttatagattttgtgttagtgaatgcaaattctaatattgttctaat |
417 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15162919 |
aatttatgtttactgatcttaaagtatagtatcatcagaatttcagattgaattttatagattttgtgttagtgaatgcaaattctaatattgttctaat |
15162820 |
T |
|
| Q |
418 |
tcaagttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggtttta |
517 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15162819 |
tcaagttgtatgaattctctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggtttta |
15162720 |
T |
|
| Q |
518 |
atcatggtaattttactttggtttcattctacattatgatgtaaatactttggtagctaattgtttnnnnnnnnnt-----atacttttgtagctaatga |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
15162719 |
atcatggtaattttactttggtttcattctacattatgatataaatactttggtagctaattgtttaaaaataaataaaaaatacttttgtagctaatgg |
15162620 |
T |
|
| Q |
613 |
ttatgacctatgattgacaactcctttgcactctaatgtatacaatggagaaaatgaggatgnnnnnnnntctatacattcagtcctttggtagcttaat |
712 |
Q |
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| T |
15162619 |
ttatgacctatgattgacaactcctttgcactctaatgtatacaatggagaaaatgaggatgaaaaaaaatctatacattcagtcctttggtagcttaat |
15162520 |
T |
|
| Q |
713 |
ggtgatg |
719 |
Q |
| |
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||||||| |
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| T |
15162519 |
ggtgatg |
15162513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 354 - 557
Target Start/End: Original strand, 24509184 - 24509381
Alignment:
| Q |
354 |
agaatttcagattgaattttatagattttgtgttagtgaatgcaaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttgg |
453 |
Q |
| |
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||||||||| ||||||| || |||||||||| | |||| |||||||||||||| ||||||||| | |||||||||| |||||||||||||||||| |
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| T |
24509184 |
agaatttcatattgaatatt---gattttgtgtgattgaacacaaattctaatattattctaattctaattgtatgaat---ctttgcttattcttttgg |
24509277 |
T |
|
| Q |
454 |
tgcatttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacatta |
553 |
Q |
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||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||| || ||| |
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| T |
24509278 |
tgcatttcttttaataggctggctccaggattggtggaatattttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttccacttta |
24509377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 380 - 557
Target Start/End: Complemental strand, 24511399 - 24511225
Alignment:
| Q |
380 |
tttgtgttagtgaatgcaaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctcc |
479 |
Q |
| |
|
||||||| | |||| ||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
24511399 |
tttgtgtgactgaacgcaaattctaatattattctaattctaattgtatgaat---ctttgcttattcttttggtgcatttctttgaataggctggctcc |
24511303 |
T |
|
| Q |
480 |
gggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgat |
557 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||| | |||||||||||||||||||||| | |||||| ||||||| |
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| T |
24511302 |
gggattggtggaatgctttagagatgttcatggtttgagtcatggtaattttactttggttacgttctactttatgat |
24511225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 603 - 658
Target Start/End: Original strand, 24510115 - 24510170
Alignment:
| Q |
603 |
tagctaatgattatgacctatgattgacaactcctttgcactctaatgtatacaat |
658 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
24510115 |
tagctaatggttatgacctatgattgacagctcctttgcactctaatgtattcaat |
24510170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 2046774 - 2046825
Alignment:
| Q |
363 |
gattgaattttatagattttgtgttagtgaatgcaaattctaatattgttct |
414 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||||||||||| |||||| |
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| T |
2046774 |
gattgaattttattgattttgtgttattgaaatcaaattctaataatgttct |
2046825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 9241396 - 9241463
Alignment:
| Q |
426 |
tatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaat |
493 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||| |||||| | |||||||||||||||| |
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| T |
9241396 |
tatgaattatctttgcttattcttttggtgtgtttgattgaataggctgaccccgggattggtggaat |
9241463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 649
Target Start/End: Complemental strand, 24511177 - 24511131
Alignment:
| Q |
603 |
tagctaatgattatgacctatgattgacaactcctttgcactctaat |
649 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||||| |
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| T |
24511177 |
tagctaatagttatgacctatgattgacaactccttcgcaatctaat |
24511131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 653
Target Start/End: Complemental strand, 13146595 - 13146545
Alignment:
| Q |
603 |
tagctaatgattatgacctatgattgacaactcctttgcactctaatgtat |
653 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
13146595 |
tagctaatggttatgacctatgcttgacaactcctttgcactctaatgtat |
13146545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 557
Target Start/End: Complemental strand, 13146690 - 13146643
Alignment:
| Q |
510 |
tggttttaatcatggtaattttactttggtttcattctacattatgat |
557 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| ||||||| |
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| T |
13146690 |
tggtttgagtcatggtaattttactttggtttcgttctactttatgat |
13146643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 363 - 538
Target Start/End: Complemental strand, 27427826 - 27427658
Alignment:
| Q |
363 |
gattgaattttatagattttgtgttagtgaatgcaaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttggtgcatttct |
462 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| |||||||||||| | |||| | |||||||| || ||||| |||||||||||||| || || |
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| T |
27427826 |
gattgaattttattgattttgtgttattgaatacaaattctaataatattctta------ttgtatgagttctctttacttattcttttggttcacttga |
27427733 |
T |
|
| Q |
463 |
ttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttgg |
538 |
Q |
| |
|
|||| |||||| | |||| |||| | ||| || |||||||||||||||| || ||| |||||| ||||| ||||| |
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| T |
27427732 |
ttgaataggctagttccgcgattatttgaa-ttcttagtgcagttcatgggttgaataatggtagttttagtttgg |
27427658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 445 - 554
Target Start/End: Original strand, 19400682 - 19400790
Alignment:
| Q |
445 |
ttcttttggtgcatttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcat |
544 |
Q |
| |
|
||||||||||||||||| |||| |||| | |||| || | ||||||||| || | ||||||||||| ||| ||||||||| |||||| ||||||||| | |
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| T |
19400682 |
ttcttttggtgcatttcattgaataggttggctcgggaaatggtggaatagttcaatgcagttcatgctttgaatcatggt-attttaatttggtttcgt |
19400780 |
T |
|
| Q |
545 |
tctacattat |
554 |
Q |
| |
|
||||| |||| |
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| T |
19400781 |
tctactttat |
19400790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 493
Target Start/End: Complemental strand, 15514730 - 15514660
Alignment:
| Q |
423 |
ttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaat |
493 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |||| |||| || ||| |||| ||||||||||||| |
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|
| T |
15514730 |
ttgtatgaattatctttgcttattcttttggtgtatttgattgaataagctgactccaggattggtggaat |
15514660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 541
Target Start/End: Complemental strand, 23544516 - 23544451
Alignment:
| Q |
475 |
gctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggttt |
541 |
Q |
| |
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|||||||| |||||||||| || ||||||||||||||||| ||| ||||||| |||||||| |||| |
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| T |
23544516 |
gctccggggttggtggaatgctt-agtgcagttcatggtttgaataatggtaagtttacttttgttt |
23544451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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