View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11271_low_6 (Length: 676)

Name: NF11271_low_6
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11271_low_6
NF11271_low_6
[»] chr3 (2 HSPs)
chr3 (10-676)||(51027771-51028437)
chr3 (613-653)||(19676079-19676119)
[»] chr8 (2 HSPs)
chr8 (610-651)||(1489755-1489796)
chr8 (611-651)||(16008391-16008431)
[»] chr4 (1 HSPs)
chr4 (610-653)||(54963694-54963737)
[»] chr6 (1 HSPs)
chr6 (611-653)||(34501-34543)
[»] chr1 (4 HSPs)
chr1 (610-652)||(7922070-7922112)
chr1 (609-651)||(28090688-28090730)
chr1 (610-651)||(4029368-4029409)
chr1 (614-642)||(17640066-17640094)
[»] chr5 (2 HSPs)
chr5 (615-651)||(218052-218088)
chr5 (610-650)||(41894320-41894360)


Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 10 - 676
Target Start/End: Complemental strand, 51028437 - 51027771
Alignment:
Q  10 aagcaaaggcacggggtgtatccatcattcacaccagactttagaaaaatacaattattaccctccagcagcggagctttaggctcagaaagccagtttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51028437 aagcaaaggcacggggtgtatccatcattcacaccagactttagaaaaatacaattattaccctccagcagcggagctttaggctcagaaagccagtttc 51028338  T
Q  110 acagatgagacgccaaatgaagaagacggcagacgaaaactttttctctttttgtcaggtaacagtgttaaagttgggggaggttagtgtctttggcaaa 209  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51028337 acagatgagacaccaaatgaagaagacggcagacaaaaactttttctctttttgtcgggtaacagtgttaaagttgggggaggttagtgtctttggcaaa 51028238  T
Q  210 ctagagggtgtatgtgtgatattttaacatatctcagggcaatgcaatgcaatttaccctatttttaaactattatcatcacttatatggaatgcttgat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51028237 ctagagggtgtatgtgtgatattttaacatatctcagggcaatgcaatgcaatttaccctatttttaaactattatcatcacttatatggaatgcttgat 51028138  T
Q  310 aaatcattcatcagcaaaacaaattaggatgatataattctcttcagatatcatacaattgtgttctaaaagtgaaaagcatcagcaaacaacaatctga 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51028137 aaatcattcatcagcaaaacaaattaggatgatataattctcttcagatatcatacaattgtgttctaaaagtgaaaagcatcagcaaacaacaatctga 51028038  T
Q  410 tagtatcttacagagcaatccattgtaccttaaaatgcacgttggggtgaaatattttagtcaaaaaccgaacttgaggaggttgtaaaggataatgctc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51028037 tagtatcttacagagcaatccattgtaccttaaaatgcacgttggggtgaaatattttagtcaaaaaccgaacttgaggaggttgtaaaggataatgctc 51027938  T
Q  510 tggaacagaaaatgcaagctggaaaacacccccgtcaaacggagtctctgaaggtccctggtggtaaacaaaataaaccagagcaaatctcagatcatcc 609  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51027937 tggaacagaaaatgcaagctggaaaacacccccatcaaacggagtctctgaaggtccctggtggtaaacaaaataaaccagagcaaatctcagatcatcc 51027838  T
Q  610 caacaacaataacaactaagtcttatcccactatgtggggtcagatcaaattacgtcataatgttct 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51027837 caacaacaataacaactaagtcttatcccactatgtggggtcagatcaaattacgtcataatgttct 51027771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 613 - 653
Target Start/End: Original strand, 19676079 - 19676119
Alignment:
Q  613 caacaataacaactaagtcttatcccactatgtggggtcag 653  Q
    ||||||||||||| ||| |||||||||||| ||||||||||    
T  19676079 caacaataacaaccaagccttatcccactaagtggggtcag 19676119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 651
Target Start/End: Complemental strand, 1489796 - 1489755
Alignment:
Q  610 caacaacaataacaactaagtcttatcccactatgtggggtc 651  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  1489796 caacaacaataacaaccaagtcttatcccactaagtggggtc 1489755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 611 - 651
Target Start/End: Original strand, 16008391 - 16008431
Alignment:
Q  611 aacaacaataacaactaagtcttatcccactatgtggggtc 651  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  16008391 aacaacaacaacaaccaagtcttatcccactaagtggggtc 16008431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 653
Target Start/End: Complemental strand, 54963737 - 54963694
Alignment:
Q  610 caacaacaataacaactaagtcttatcccactatgtggggtcag 653  Q
    ||||||||| ||||||||||||||||||||||| || |||||||    
T  54963737 caacaacaacaacaactaagtcttatcccactaagttgggtcag 54963694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 34501 - 34543
Alignment:
Q  611 aacaacaataacaactaagtcttatcccactatgtggggtcag 653  Q
    |||||||| |||||| |||||||||||||||| ||||||||||    
T  34501 aacaacaacaacaaccaagtcttatcccactaagtggggtcag 34543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 652
Target Start/End: Complemental strand, 7922112 - 7922070
Alignment:
Q  610 caacaacaataacaactaagtcttatcccactatgtggggtca 652  Q
    ||||||||| |||||| |||||||||||||||| |||||||||    
T  7922112 caacaacaacaacaaccaagtcttatcccactaagtggggtca 7922070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 651
Target Start/End: Original strand, 28090688 - 28090730
Alignment:
Q  609 ccaacaacaataacaactaagtcttatcccactatgtggggtc 651  Q
    |||||||||| |||||| |||||||||||||||| ||||||||    
T  28090688 ccaacaacaacaacaaccaagtcttatcccactaagtggggtc 28090730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 651
Target Start/End: Complemental strand, 4029409 - 4029368
Alignment:
Q  610 caacaacaataacaactaagtcttatcccactatgtggggtc 651  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  4029409 caacaacaacaacaaccaagtcttatcccactaagtggggtc 4029368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 614 - 642
Target Start/End: Original strand, 17640066 - 17640094
Alignment:
Q  614 aacaataacaactaagtcttatcccacta 642  Q
    |||||||||||||||||||||||||||||    
T  17640066 aacaataacaactaagtcttatcccacta 17640094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 651
Target Start/End: Original strand, 218052 - 218088
Alignment:
Q  615 acaataacaactaagtcttatcccactatgtggggtc 651  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  218052 acaataacaaccaagtcttatcccactaggtggggtc 218088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 650
Target Start/End: Complemental strand, 41894360 - 41894320
Alignment:
Q  610 caacaacaataacaactaagtcttatcccactatgtggggt 650  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  41894360 caacaacaacaacaacaaagtcttatcccactaagtggggt 41894320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University