View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_7 (Length: 607)
Name: NF11271_low_7
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 265501 - 266088
Alignment:
| Q |
1 |
aacaatgttagcaggaaggtcctcaactcagacacttacaaggctgaactatctgtcaacagggtcagtcttgtcaacaatggcaactctacatccaagc |
100 |
Q |
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| T |
265501 |
aacaatgttagcaggaaggtcctcaactcagacacttacaaggctgaactatctgtcaacagggtcagtcttgtcaacaatggcaactctacatccaagc |
265600 |
T |
|
| Q |
101 |
aaagcaaaggctatttttcttgctgttcctgaatttggtttttattggttttgatgaattaaaattgaattgggttggctttttcttgcatggaatatct |
200 |
Q |
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| T |
265601 |
aaagcaaaggctatttttcttgctgttcctgaatttggtttttattggttttgatgaattaaaattgaattgggttggctttttcttgcatggaatatct |
265700 |
T |
|
| Q |
201 |
ttgaatagtttttggattacattacaaccacaaaagactatatatagcaatggaaattttatatatcttcaattttaagtaaacgggtttcaattgtata |
300 |
Q |
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| T |
265701 |
ttgaatagtttttggattacattacaaccacaaaagactatatatagcaatggaaattttatatatcttcaattttaagtaaacgggtttcaattgtata |
265800 |
T |
|
| Q |
301 |
atttnnnnnnntacagagagattgtaatttcagttaatgaagtgaacatccatttatgtcatgtttagtgttttcttagacatgattgttgttcttgatt |
400 |
Q |
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| T |
265801 |
attt-ggggggtacagagagattgtaatttcagttaatgaagtgaacattcatttatgtcatgtttagtgttttcttagacatgattgttgttcttgatt |
265899 |
T |
|
| Q |
401 |
aatcggtggtataatttacaagtttctcggttgcctattgtttgtcaatgttacattcaaggtttgctagagaatttgcatgtactgaannnnnnngtac |
500 |
Q |
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| T |
265900 |
aatcggtggtataatttacaagtttctcagttgcctattgtttgtcaatgttacattcaaggtttgctagagaatttgcatgtactgaatttttttgtac |
265999 |
T |
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| Q |
501 |
atggtcaatggtcaatgagaaagaagttggttttagttcacaggtttcttttgattttggcgaatatttgtggtacactgataggtatt |
589 |
Q |
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| T |
266000 |
atggtcaatggtcaacgagaaagaagttggttttagttcacaggtttcttttgattttggcgaatatttgtggtacactgataggtatt |
266088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 312 - 425
Target Start/End: Original strand, 280228 - 280341
Alignment:
| Q |
312 |
tacagagagattgtaatttcagttaatgaagtgaacatccatttatgtcatgtttagtgttttcttagacatgattgttgttcttgattaatcggtggta |
411 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
280228 |
tacatagagattgtaatttcagttaatgaagtggacatccatttatgtcatgtttagtgatttcttagatatgattgttgttcttgattaatcggtggta |
280327 |
T |
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| Q |
412 |
taatttacaagttt |
425 |
Q |
| |
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|||||||||||||| |
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| T |
280328 |
taatttacaagttt |
280341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 279238 - 279366
Alignment:
| Q |
76 |
aacaatggcaactctacatccaagcaaagcaaaggctatttttcttgctgttcctgaatttggtttttattg--gttttgatgaattaaaattgaattgg |
173 |
Q |
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|||||| ||||| || |||||||||||| | | |||| ||||||||||||||||||||||| ||||| ||| | |||| | |||||||||| |||||| |
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| T |
279238 |
aacaatagcaacactgcatccaagcaaaaccatagctacttttcttgctgttcctgaatttgattttttttgttggtttggttaattaaaattcaattgg |
279337 |
T |
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| Q |
174 |
gttggctttttcttgcatggaatatcttt |
202 |
Q |
| |
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|||||| ||||| |||| ||||||||| |
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| T |
279338 |
cttggctccttctttcatgaaatatcttt |
279366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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