View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11271_low_9 (Length: 581)
Name: NF11271_low_9
Description: NF11271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11271_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 26 - 571
Target Start/End: Complemental strand, 40531803 - 40531258
Alignment:
| Q |
26 |
aaaacaaaagatctatagcaggtgaaattggagagtgtacggatggatggtatgtgggatttggaggtgcagtttaattagggttgaatacattgaacgt |
125 |
Q |
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| T |
40531803 |
aaaactaaagatctatagcagatgaaatgggagagtgtacggatggatggtatgtgggatttggaggtgcagtttaattagggttgaatacattgaacgt |
40531704 |
T |
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| Q |
126 |
gaagtacatgcatagagtttcatttgttatcaaaacttccattatttttgtttttctgtttcaagtgttaactattacaaaggattcaatgaatatatag |
225 |
Q |
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| T |
40531703 |
gaagtacatgcatagagtttcatttgttatcaaaacttccattatttttgtttttctgtttcaagtgttaactattacaaaggattcaatgaatatatag |
40531604 |
T |
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| Q |
226 |
ttgaatcagttacaacttcctaactgactcaagaaactctaggagtgtaccttagttatatagtgagcaatctcacactgtataatgtttaccagtacaa |
325 |
Q |
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| T |
40531603 |
ttgaatcagttacaacttcctaactgactcaagaaactctaggagtgtaccttagttatatagtgagcaatctcacactgtataatgtttaccagtacaa |
40531504 |
T |
|
| Q |
326 |
ttatgtaatcccttttgcctatgctttaaaatatcccctacaaaactgaaggtgtttgctaatcagaacatttttagcttggtattattgaagcaaaatt |
425 |
Q |
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| T |
40531503 |
ttatgtaatcccttttgcctatgctttaaaatatcccctac-aaactgaaggtttttgctaatcagaacatttttagcttggtattattgaagcaaaatt |
40531405 |
T |
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| Q |
426 |
gcaaggagaaagaggcgtagtgagtggatatgctggttgatccgttgcaagaaca-gatgcaattttatataggtacttgatatcagacgtataatttcg |
524 |
Q |
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|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40531404 |
gcaaggagaaagaggcgtggtgagtggatttgctgtttgatccgttgcaagaacatgatgcaattttatataggaacttgatatcagacgtataatttcg |
40531305 |
T |
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| Q |
525 |
agcatatcttatatagtttttaatttgatatttcttctttctctctg |
571 |
Q |
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| T |
40531304 |
agcatattttatatagtttttaatttgatatttgttctttctctctg |
40531258 |
T |
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