View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11272_high_1 (Length: 401)
Name: NF11272_high_1
Description: NF11272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11272_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 41648082 - 41647696
Alignment:
| Q |
1 |
cggcaaccagcaccacctatccccaagtcaaatccaaactttgcagcaaacagtttggtgtcgatctagcaaccaaccaatctgtaaaatcttcgactgt |
100 |
Q |
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| T |
41648082 |
cggcaaccagcaccacctatccccaagtcaaatccaaactttgcagcaaacagtttggtgtcgatctagcaaccaaccaatctgtaaaatcttcgactgt |
41647983 |
T |
|
| Q |
101 |
aaacaattaatccgaacaaaacacctctttcgtggcaattaccttgaggttttaaataaacactatgcaaccaactctctccatttgccactcaataaat |
200 |
Q |
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| T |
41647982 |
aaacaattaatccgaacaaaacacctctttcgtggccattaccttgaggttttaaataaacactatacaaccaactcactccatttgccactcaataaat |
41647883 |
T |
|
| Q |
201 |
atgacagaatacaaattaatcacatgctgcagttgatcaaatcatatccaattataacaatggtttnnnnnnnnnnnngtcgacaaaatgaggcaagggt |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
41647882 |
atgacagaatacaaattagtcacatgctgcagttgatcaaatcatatccaattgtaacaatggtttaaaaaataaaaagtcgacaaaatgaggcatgggt |
41647783 |
T |
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| Q |
301 |
tgatatactcacaataaaggaatcataaatgaagcaaatgctcgagcaaggagcaacatcaaaaacatgttcaacatcaagtaattg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41647782 |
tgatatactcacaataaaggaatcataaatgaagcaaatgctcgagcaaggagcaacatcaaaaacatgttcaacatcaagtaattg |
41647696 |
T |
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