View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11272_high_3 (Length: 281)

Name: NF11272_high_3
Description: NF11272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11272_high_3
NF11272_high_3
[»] chr8 (8 HSPs)
chr8 (86-264)||(6028306-6028484)
chr8 (28-94)||(6029310-6029376)
chr8 (108-184)||(8466531-8466607)
chr8 (148-190)||(8084367-8084409)
chr8 (122-183)||(4873501-4873562)
chr8 (173-237)||(10989216-10989280)
chr8 (113-165)||(28213383-28213435)
chr8 (173-237)||(43599376-43599440)
[»] chr4 (10 HSPs)
chr4 (113-185)||(11056374-11056446)
chr4 (183-237)||(10390450-10390504)
chr4 (142-188)||(7572741-7572787)
chr4 (119-161)||(8362600-8362642)
chr4 (153-223)||(17222656-17222726)
chr4 (122-180)||(30565856-30565914)
chr4 (113-183)||(44118903-44118973)
chr4 (173-235)||(51469546-51469608)
chr4 (148-237)||(27634506-27634595)
chr4 (122-166)||(7926307-7926351)
[»] chr5 (10 HSPs)
chr5 (123-221)||(17150239-17150337)
chr5 (114-183)||(18333509-18333578)
chr5 (173-237)||(24125127-24125191)
chr5 (148-183)||(24270149-24270184)
chr5 (148-183)||(24346781-24346816)
chr5 (122-187)||(12592761-12592826)
chr5 (173-237)||(2908744-2908808)
chr5 (173-237)||(13413649-13413713)
chr5 (173-237)||(34457161-34457225)
chr5 (173-237)||(40169016-40169080)
[»] chr7 (8 HSPs)
chr7 (113-183)||(21213085-21213155)
chr7 (113-183)||(24612767-24612837)
chr7 (173-237)||(13310400-13310464)
chr7 (114-190)||(31257068-31257144)
chr7 (123-184)||(23796227-23796288)
chr7 (122-183)||(47849550-47849611)
chr7 (122-190)||(15317532-15317599)
chr7 (173-237)||(23396674-23396738)
[»] chr3 (12 HSPs)
chr3 (113-183)||(45828216-45828286)
chr3 (143-190)||(41915171-41915218)
chr3 (173-236)||(50057094-50057157)
chr3 (113-184)||(50930672-50930743)
chr3 (132-190)||(42420813-42420871)
chr3 (113-190)||(2806323-2806400)
chr3 (173-253)||(42420962-42421042)
chr3 (173-237)||(9264268-9264332)
chr3 (114-186)||(20303105-20303177)
chr3 (173-237)||(22407623-22407687)
chr3 (173-237)||(37058746-37058810)
chr3 (173-237)||(51642610-51642674)
[»] chr1 (11 HSPs)
chr1 (122-183)||(35892270-35892331)
chr1 (122-183)||(52907363-52907424)
chr1 (119-166)||(15183453-15183500)
chr1 (108-183)||(31181557-31181632)
chr1 (122-184)||(9146597-9146659)
chr1 (114-235)||(17412307-17412429)
chr1 (146-192)||(41066942-41066988)
chr1 (122-183)||(17452872-17452933)
chr1 (173-237)||(15391884-15391948)
chr1 (173-237)||(29273041-29273105)
chr1 (173-237)||(29273200-29273264)
[»] chr6 (6 HSPs)
chr6 (123-186)||(6054383-6054446)
chr6 (173-235)||(11313359-11313421)
chr6 (122-183)||(24554096-24554157)
chr6 (172-224)||(5557146-5557198)
chr6 (113-161)||(6312020-6312067)
chr6 (173-237)||(16876985-16877049)
[»] chr2 (4 HSPs)
chr2 (125-183)||(9927893-9927951)
chr2 (113-159)||(13250325-13250371)
chr2 (154-234)||(93713-93793)
chr2 (173-237)||(3435461-3435525)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 86 - 264
Target Start/End: Complemental strand, 6028484 - 6028306
Alignment:
86 gattgtgagatatgttggtagttgttaaaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaac 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6028484 gattgtaagatatgttggtagttgttaaaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaac 6028385  T
186 cagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagcttccgttaagattcattggaccacctact 264  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
6028384 cagttgtttaaggatgcgttggatcccaaatttcaatatagtatcagagcttccgttaagattcattgggacacctact 6028306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 6029376 - 6029310
Alignment:
28 gaattgaaattgaaagtctcttaaatattgacgcatatatgcgtgtttaagtgtctttgattgtgag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6029376 gaattgaaattgaaagtctcttaaatattgacgcatatatgcgtgtttaagtgtctttgattgtgag 6029310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 8466607 - 8466531
Alignment:
108 tgttaaaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaa 184  Q
    |||| |||||||| |||||||||||| |||| ||||||||| || |||||||||||||| |||  ||||||||||||    
8466607 tgtttaaagaatcccacatcggataagagatggtctgaacaagtgtttataagtgggggaaatcctcacctcacaaa 8466531  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 8084367 - 8084409
Alignment:
148 atgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
8084367 atgtatttataagtgggggtaaacctcacctcacaaaccagtt 8084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 4873562 - 4873501
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||| |||| ||||||  ||| | |||| ||||||||||||| |||||||||||    
4873562 cacatcggataagagatggtctgacaatgcagttatcagtgggggtaatactcacctcacaa 4873501  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 10989280 - 10989216
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
10989280 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 10989216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 28213435 - 28213383
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggg 165  Q
    ||||| ||| ||||||||||| |||| ||||||  ||||||||||||||||||    
28213435 aaagagtcttacatcggataagagatagtctgacaatgtatttataagtgggg 28213383  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 43599376 - 43599440
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
43599376 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 43599440  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 11056446 - 11056374
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaac 185  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||||||||| | ||| ||| ||||||||||    
11056446 aaagagtctcacatttgataaaagattgtctgaacatgtgtttataagtgggagcaatcttcgcctcacaaac 11056374  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 10390504 - 10390450
Alignment:
183 aaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||||| | |||||||| ||| |||||||||||||||||| ||||||||||||    
10390504 aaccagttttgtaaggatgagttagaccccaaatttcaacatggtatcagagctt 10390450  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 7572787 - 7572741
Alignment:
142 ctgaacatgtatttataagtgggggtaatattcacctcacaaaccag 188  Q
    ||||||| || |||||||||||||||||| |||||||||||| ||||    
7572787 ctgaacaagtgtttataagtgggggtaatcttcacctcacaagccag 7572741  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 8362642 - 8362600
Alignment:
119 tctcacatcggataaaagattgtctgaacatgtatttataagt 161  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
8362642 tctcacatcggacaaaagatagtctgaacatgtgtttataagt 8362600  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 17222726 - 17222656
Alignment:
153 tttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaaca 223  Q
    |||||||||||||| |||  ||||||||||| || ||| | |||||||| ||| | |||||||||||||||    
17222726 tttataagtgggggcaatcctcacctcacaagccggttttgtaaggatgtgttaggccccaaatttcaaca 17222656  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 30565914 - 30565856
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctca 180  Q
    |||||||| || ||||||||||||  ||||||||||||||| |||||||  ||||||||    
30565914 cacatcgggtagaagattgtctgataatgtatttataagtgagggtaatcctcacctca 30565856  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 44118973 - 44118903
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    ||||| || |||||||||||| |||| | ||||  |||| ||||||||||||||||||  |||||||||||    
44118973 aaagagtcccacatcggataagagatggcctgacaatgtgtttataagtgggggtaatcctcacctcacaa 44118903  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 51469546 - 51469608
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagc 235  Q
    |||||| |||| || ||||| |||||||| ||| | |||||||||||||||| ||||||||||    
51469546 tcaccttacaagccggttgtgtaaggatgagttaggccccaaatttcaacatggtatcagagc 51469608  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 27634595 - 27634506
Alignment:
148 atgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||| ||||| |||||||| |||  ||||||||||| || ||| | ||| |||| ||| | ||||||||| |||||| ||||||||||||    
27634595 atgtgtttatgagtgggggcaatcctcacctcacaagccggttttgtaacgatgagttaggccccaaattacaacatggtatcagagctt 27634506  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 7926307 - 7926351
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtggggg 166  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||||    
7926307 cacatcggacaaaagatggcctgaacatgtgtttataagtggggg 7926351  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 17150337 - 17150239
Alignment:
123 acatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaa 221  Q
    ||||||||||  |||| ||||||| |||| |||||||||||||| |||  ||||||||| |||||||| | ||||||||  || | |||||||||||||    
17150337 acatcggataggagatggtctgaaaatgtgtttataagtgggggcaatcctcacctcaccaaccagttttgtaaggatgaattaggccccaaatttcaa 17150239  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 18333578 - 18333509
Alignment:
114 aagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    ||||||| |||||||||||  |||| ||||||  |||| ||||||||||||||||||  |||||||||||    
18333578 aagaatcccacatcggataggagatggtctgacaatgtgtttataagtgggggtaatcctcacctcacaa 18333509  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 24125127 - 24125191
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| |||||||||||||||||| ||||||||||||    
24125127 tcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacatggtatcagagctt 24125191  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 24270184 - 24270149
Alignment:
148 atgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||||||||||||||| |||||||||||    
24270184 atgtatttataagtgggggtaatactcacctcacaa 24270149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 24346816 - 24346781
Alignment:
148 atgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||||||||||||||| |||||||||||    
24346816 atgtatttataagtgggggtaatactcacctcacaa 24346781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 12592826 - 12592761
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaacca 187  Q
    |||||| | ||||||||| |||||| || ||||||||||||||| |||| ||||  ||||||||||    
12592826 cacatcagttaaaagattatctgaatatatatttataagtggggataattttcatatcacaaacca 12592761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 2908808 - 2908744
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
2908808 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 2908744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 13413649 - 13413713
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
13413649 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 13413713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 34457161 - 34457225
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
34457161 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 34457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 40169080 - 40169016
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
40169080 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 40169016  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 21213155 - 21213085
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||| | |||| ||||||||||||  ||||||||| |||||||||||| |||||  |||||||||||    
21213155 aaagaatcccgcatcagataaaagattgcatgaacatgtgtttataagtgggagtaatcatcacctcacaa 21213085  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 24612767 - 24612837
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    ||||| ||||||||||||||||||||||| |||| |||| |||||||||| ||   || ||||||||||||    
24612767 aaagagtctcacatcggataaaagattgtatgaatatgtgtttataagtgaggactatcttcacctcacaa 24612837  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 13310464 - 13310400
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||| ||||||||| ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
13310464 tcacttcacaaaccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 13310400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 31257144 - 31257068
Alignment:
114 aagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    |||| ||||||||||| || ||| | ||||||  || | |||||||||||||| ||| |||||||||||||||||||    
31257144 aagagtctcacatcggttagaagttggtctgacaatttgtttataagtgggggcaatcttcacctcacaaaccagtt 31257068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 23796288 - 23796227
Alignment:
123 acatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaa 184  Q
    |||||||||||||||| |||| |  |||| |||||||||||||| |||  ||||||||||||    
23796288 acatcggataaaagatggtctaacaatgtgtttataagtgggggcaatcatcacctcacaaa 23796227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 47849550 - 47849611
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    ||||||||||||||||| |  ||||||||| ||||||||| |||| |||  |||||||||||    
47849550 cacatcggataaaagatggcatgaacatgtgtttataagttggggcaatcctcacctcacaa 47849611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 15317532 - 15317599
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    ||||| ||||||||||| | |||| ||||| |||||||||||||| |||  ||||||||||||| ||||    
15317532 cacattggataaaagatggcctga-catgtgtttataagtgggggcaatcctcacctcacaaactagtt 15317599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 23396674 - 23396738
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
23396674 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 23396738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 45828216 - 45828286
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    ||||| || ||||||||| ||||||| | |||||||||| |||||||||||||| ||| | ||||||||||    
45828216 aaagagtcccacatcggacaaaagatggcctgaacatgtgtttataagtgggggcaatctccacctcacaa 45828286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 41915171 - 41915218
Alignment:
143 tgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||||||    
41915171 tgaacatgtgtttataagtgggggcaatcctcacctcacaaaccagtt 41915218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 50057094 - 50057157
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagct 236  Q
    |||||| |||| |||||| | |||||||| ||| | |||||||||||||||| |||||||||||    
50057094 tcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacatggtatcagagct 50057157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 50930672 - 50930743
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaa 184  Q
    ||||| || |||||| |||||||||| | || ||||||| |||||||||||||| |||  ||||||||||||    
50930672 aaagactcccacatctgataaaagatggccttaacatgtgtttataagtgggggcaatcctcacctcacaaa 50930743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 42420813 - 42420871
Alignment:
132 aaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    ||||||| || ||||||||| |||||||||||| | ||| ||||||| |||||||||||    
42420813 aaaagatggtatgaacatgtgtttataagtgggagcaatcttcaccttacaaaccagtt 42420871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 2806400 - 2806323
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagtt 190  Q
    ||||| ||||| |||||||||||||| | | | |||||| |||||||||||| | |||  ||||||||||| ||||||    
2806400 aaagagtctcatatcggataaaagatggccggtacatgtgtttataagtgggtggaatcctcacctcacaagccagtt 2806323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 42420962 - 42421042
Alignment:
173 tcacctcacaaaccagttgtt-taaggatgcgttggaccccaaatttcaacatagtatcagagcttccgttaagattcattg 253  Q
    |||||| ||||||||||| || |||||| ||||| | |||||| ||||||||| || ||||||| ||||||||||| |||||    
42420962 tcaccttacaaaccagtttttgtaaggaggcgttaggccccaa-tttcaacatggtttcagagcatccgttaagatccattg 42421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 9264332 - 9264268
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
9264332 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 9264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 20303177 - 20303105
Alignment:
114 aagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaacc 186  Q
    ||||||| |||||||||||  | || | ||||  ||||||||||||||||||| |||  ||||||||||||||    
20303177 aagaatcccacatcggatatgacatggcctgacaatgtatttataagtgggggcaatcctcacctcacaaacc 20303105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 22407687 - 22407623
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
22407687 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 22407623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 37058810 - 37058746
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| ||||||| ||| | |||||||| ||| | ||| |||||||||||| ||||||||||||    
37058810 tcaccttacaaaccggttttgtaaggatgagttaggcccaaaatttcaacatggtatcagagctt 37058746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 51642674 - 51642610
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
51642674 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 51642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 35892270 - 35892331
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||| |||| ||||| ||||||  ||||||||||||||||||| |||| |||||||||||    
35892270 cacatcagatataagatggtctgacaatgtatttataagtgggggcaatactcacctcacaa 35892331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 52907363 - 52907424
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||||| || || ||||||||| |||||||||||||| |||  |||||||||||    
52907363 cacatcggataaaatatggtttgaacatgtgtttataagtgggggcaatcctcacctcacaa 52907424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 15183453 - 15183500
Alignment:
119 tctcacatcggataaaagattgtctgaacatgtatttataagtggggg 166  Q
    |||||||||||  ||||||| |||||||||||| ||||||||||||||    
15183453 tctcacatcgggcaaaagatagtctgaacatgtgtttataagtggggg 15183500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 31181632 - 31181557
Alignment:
108 tgttaaaagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||| |  ||||| |||||| |||| | |||||||||| |||||||||||||| |||  |||||||||||    
31181632 tgttaaaagagttccacattggataagagatggcctgaacatgtgtttataagtgggggcaatcctcacctcacaa 31181557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 9146659 - 9146597
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaa 184  Q
    ||||||||| ||||||| |||||||||||| | ||||| |||||| |||  ||||||||||||    
9146659 cacatcggacaaaagatggtctgaacatgtgtatataactgggggcaatcctcacctcacaaa 9146597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 17412307 - 17412429
Alignment:
114 aagaatctcacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggacccca 213  Q
    |||| ||||||||||||||  |||||||||||  |||| |||||||||||||  |||   ||||||  ||||| ||| | |||||||  ||| |||||||    
17412307 aagagtctcacatcggataggagattgtctgataatgtgtttataagtggggacaatccgcacctcgtaaaccggttttgtaaggataagttagacccca 17412406  T
214 aattt-caacatagtatcagagc 235  Q
    ||||| |||||| |||| |||||    
17412407 aatttccaacatggtattagagc 17412429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 41066942 - 41066988
Alignment:
146 acatgtatttataagtgggggtaatattcacctcacaaaccagttgt 192  Q
    |||||| ||||||||||| |||||| ||||||||||||||| |||||    
41066942 acatgtgtttataagtggaggtaatcttcacctcacaaaccggttgt 41066988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 17452933 - 17452872
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||| | || | ||||  ||||||||||||||||||| ||| ||||||||||||    
17452933 cacatcggataagacatggcctgacaatgtatttataagtgggggcaatcttcacctcacaa 17452872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 15391884 - 15391948
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| |||||| | |||||||| ||  | |||||||||||||||| ||||||||||||    
15391884 tcaccttacaagccagttttgtaaggatgagtaaggccccaaatttcaacatggtatcagagctt 15391948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 29273105 - 29273041
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
29273105 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 29273041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 29273264 - 29273200
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
29273264 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 29273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 6054383 - 6054446
Alignment:
123 acatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaaacc 186  Q
    ||||||||||| |||| ||||||  | ||||||||||||||||| |||  ||||||||||||||    
6054383 acatcggataagagatggtctgacaaggtatttataagtgggggcaatcctcacctcacaaacc 6054446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 11313421 - 11313359
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagc 235  Q
    |||||| |||| |||||| | |||||||| ||| | |||||||||||||||| ||||||||||    
11313421 tcaccttacaagccagttttgtaaggatgagttaggccccaaatttcaacatggtatcagagc 11313359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 24554096 - 24554157
Alignment:
122 cacatcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||||||  |||| ||||||  || |||||||||||||||| ||| ||||||||||||    
24554096 cacatcggataggagatggtctgacaatatatttataagtgggggcaatcttcacctcacaa 24554157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 5557146 - 5557198
Alignment:
172 ttcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacat 224  Q
    ||||||| |||| | |||| |||||||||| |||||||| |||||||||||||    
5557146 ttcaccttacaagctagttttttaaggatgagttggacctcaaatttcaacat 5557198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 6312020 - 6312067
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataagt 161  Q
    ||||| |||||||||||| ||||||| |||||||||||| |||||||||    
6312020 aaagagtctcacatcggacaaaagatggtctgaacatgt-tttataagt 6312067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 16877049 - 16876985
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
    |||||| |||| || ||| | |||||||| ||| | |||||||||||||||| ||||||||||||    
16877049 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagctt 16876985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 9927893 - 9927951
Alignment:
125 atcggataaaagattgtctgaacatgtatttataagtgggggtaatattcacctcacaa 183  Q
    |||||||| ||||| ||||||  |||| ||||||||||||||||||  |||||||||||    
9927893 atcggatagaagatggtctgacaatgtgtttataagtgggggtaatcctcacctcacaa 9927951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 13250371 - 13250325
Alignment:
113 aaagaatctcacatcggataaaagattgtctgaacatgtatttataa 159  Q
    ||||| ||||||||| ||||||||||||| ||||||||| |||||||    
13250371 aaagagtctcacatcagataaaagattgtttgaacatgtgtttataa 13250325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 93793 - 93713
Alignment:
154 ttataagtgggggtaatattcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagag 234  Q
    ||||||||||||| |||  ||||||||||| || ||| | | |||||| ||| | || ||||||||||||| |||||||||    
93793 ttataagtgggggcaatcctcacctcacaagccggttttgtgaggatgagttaggcctcaaatttcaacatggtatcagag 93713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 3435525 - 3435461
Alignment:
173 tcacctcacaaaccagttgtttaaggatgcgttggaccccaaatttcaacatagtatcagagctt 237  Q
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3435525 tcaccttacaaaccggttttgtaaggatgagttaggccccaaattacaacatggtatcagagctt 3435461  T

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