View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11272_low_2 (Length: 342)
Name: NF11272_low_2
Description: NF11272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11272_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 334
Target Start/End: Original strand, 30343270 - 30343575
Alignment:
| Q |
29 |
tggtatttggcatgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttac |
128 |
Q |
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| T |
30343270 |
tggtatctggcatgcaagtacttgacaagagttattctactaaggatcatgtttacaagattcatagaagtttacaagtcaagtggatacccaaggttac |
30343369 |
T |
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| Q |
129 |
aaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaa |
228 |
Q |
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| T |
30343370 |
aaccattcgggaacttaaagatctaaaaaaattgggattggagtccctaattagcaacctgatgagtcacgtgttaaagctgaatcatgatgaggctaaa |
30343469 |
T |
|
| Q |
229 |
cctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagc |
328 |
Q |
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| T |
30343470 |
cctaaagccatgtctataacactcagatccaatggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagc |
30343569 |
T |
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| Q |
329 |
tctctg |
334 |
Q |
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|||||| |
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| T |
30343570 |
tctctg |
30343575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30347428 - 30347482
Alignment:
| Q |
280 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctg |
334 |
Q |
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| T |
30347428 |
ctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgagctctctg |
30347482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 40 - 327
Target Start/End: Original strand, 28560386 - 28560674
Alignment:
| Q |
40 |
atgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttacaaccattcagg |
139 |
Q |
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||||| ||||||||||| || |||||| |||||||||||||| ||||||||| | |||||||| ||||||||||| |||||||||||| | || || | |
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| T |
28560386 |
atgcatgtacttgacaaaagctattcttctaaggatcatgttaacaagattctcataagtttactagtcaagtggaggcccaaggttacatctatccaag |
28560485 |
T |
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| Q |
140 |
aacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaacctaaagccat |
239 |
Q |
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| T |
28560486 |
aagctaaaaatatgaacaaactgggacttgagtcccttattagcagcccggtgagtcatgagttagagttgaatcatgatgatgataaacctaaagtcaa |
28560585 |
T |
|
| Q |
240 |
gtctataacactcagatccaat-ggcaaaacggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgag |
327 |
Q |
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|||||||||||||| |||||| ||||||| ||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
28560586 |
gtctataacactcaaatccaaaaggcaaaatggtgaaagctctgcaggctaaagatgaagctctataggaagctgatgaagatgttgag |
28560674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 327
Target Start/End: Original strand, 23212803 - 23213087
Alignment:
| Q |
29 |
tggtatttggcatgcaggtacttgacaagagttattctactaaggatcatgtttacaagattcataaaagtttacaagtcaagtggatacccaaggttac |
128 |
Q |
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|
|||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||| ||||||||||| | |||||||| || ||| |||| |
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| T |
23212803 |
tggtatttggcatgcatgtacttgacaagagctacataactaaggatcatgttaacaagattcttaaaagtttaccggccaagtggagacgtaagcttac |
23212902 |
T |
|
| Q |
129 |
aaccattcaggaacctaaagatctnnnnnnnttgggattggagtccctaattagcaacctgatgagtcacgttttggagctgaatcatgatgaggctaaa |
228 |
Q |
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|||||||||||| ||| |||||| | |||| ||| ||||| ||||||||| || || | |||||||||||||||||| |
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| T |
23212903 |
taccattcaggaagctacagatctgaacaagctaggatcggaatccctcattagcaacatg---------------gaattcaatcatgatgaggctaaa |
23212987 |
T |
|
| Q |
229 |
cctaaagccatgtctataacactcagatccaatggcaaaac-ggtgaaagctctgcaagctgaagatgaagctccagaggaagctgatgaagatgttgag |
327 |
Q |
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|||||| ||| |||||||| |||| |||||| ||||||| ||| |||| |||||| |||||||||||||||||| |||||||| |||||||||||||| |
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| T |
23212988 |
cctaaatccaagtctataatgctcaaatccaaaggcaaaaatggtcaaaggtctgcaggctgaagatgaagctccaaaggaagctaatgaagatgttgag |
23213087 |
T |
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