View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11273_high_10 (Length: 374)
Name: NF11273_high_10
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 33251355 - 33250995
Alignment:
| Q |
1 |
tttatttattttaccctttgctattgatctatcaattcttctggtttagtttttatgccattaccaataattaannnnnnnatatacttgatggtgcagc |
100 |
Q |
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| T |
33251355 |
tttatttattttaccctttgctattgatctatcaattcttctggtttaatttttataccattaccaataattaatttttttatatacttgatggtgcagc |
33251256 |
T |
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| Q |
101 |
ctggtcacaggtactattacccacatcatccatatcatcaacaaaatactatattcaacaagggttataataacattgcagaaagaaatccatattttga |
200 |
Q |
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| T |
33251255 |
ctggtcacaggtactattacccacatcatccatatcatcaacaaaatactatattcaacaaggactataataacattgcagaaagaaatccatattttga |
33251156 |
T |
|
| Q |
201 |
tagaagaatgatggaacctcgtcatcaagttagagctgaacaaattggatatgatcgttatggaaaattcgattcaaatatttctttctatggaagagtt |
300 |
Q |
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| T |
33251155 |
tagaagaatgatggaaccacgtcatcaagttgaagctaatcgagttggatatgatcgttatggaagattcgattcaaatatttctttctatggaagagtt |
33251056 |
T |
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| Q |
301 |
gatccttaccctagctaccaagcttactatgatggtgctgtcttcttcttcttcggagttc |
361 |
Q |
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| T |
33251055 |
gatccttaccctagctaccaagcttactatgatggtgctgtcttcttcttcttcggggttc |
33250995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 40049768 - 40049844
Alignment:
| Q |
189 |
tccatattttgatagaagaatgatggaacctcgtcatcaagttagagctgaacaaattggatatgatcgttatggaa |
265 |
Q |
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| T |
40049768 |
tccatattttgatagaagaatggtggaacctagtcatcctatgagagctggtcaaattggatatgatcgtcatggaa |
40049844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 40049887 - 40049929
Alignment:
| Q |
290 |
atggaagagttgatccttaccctagctaccaagcttactatga |
332 |
Q |
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| T |
40049887 |
atggaagagttgatccttacactagctatcaagcttactatga |
40049929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 1617136 - 1617093
Alignment:
| Q |
82 |
atatacttgatggtgcagcctggtcacaggtactattacccaca |
125 |
Q |
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| T |
1617136 |
atatacttgatggtgcagcctaatcacaggtactattacccaca |
1617093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 1616939 - 1616889
Alignment:
| Q |
282 |
ttctttctatggaagagttgatccttaccctagctaccaagcttactatga |
332 |
Q |
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||||||| |||| ||||||||||||||| ||||||| |||||||||||||| |
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| T |
1616939 |
ttctttccatgggagagttgatccttacactagctatcaagcttactatga |
1616889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 1617042 - 1616968
Alignment:
| Q |
191 |
catattttgatagaagaatgatggaacctcgtcatcaagttagagctgaacaaattggatatgatcgttatggaa |
265 |
Q |
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|||||||||||||||||||| |||||||| |||||| | |||||| ||| ||||||||||||||||||||| |
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| T |
1617042 |
catattttgatagaagaatggtggaacctagtcatcctatgggagctggtcaagttggatatgatcgttatggaa |
1616968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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