View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11273_high_17 (Length: 239)
Name: NF11273_high_17
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_high_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 52094088 - 52093869
Alignment:
| Q |
19 |
cattagcttccctaattaaaagaattgaaagcaatacaaatatattgtcattggcacttccaaaactccgtaaggttaatctctcaggtaattacaacnn |
118 |
Q |
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| T |
52094088 |
cattaacttccctaattaaaagaattgaaagcaatgcaaatatattgtcattggcacttccaaaactccgtaaggttaatctctcaggtaattacaactt |
52093989 |
T |
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| Q |
119 |
nnnnnaagtaagctaccttagatgttagttgcatgttgttaaaatatgttaggtttcatttagataaaggaaacttgcttcaaactttgttttctattgt |
218 |
Q |
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| T |
52093988 |
tttt-aagtaagctaccttcgatgttagttgcatgttgttaaaatatgttaggtttcatttagataaaggaaacttgcttcaaactttgttttgtattgt |
52093890 |
T |
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| Q |
219 |
taatgtatgttttgtttaatt |
239 |
Q |
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| T |
52093889 |
taatgtatgttttgtttaatt |
52093869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 52085092 - 52085052
Alignment:
| Q |
165 |
tgttaggtttcatttagataaaggaaacttgcttcaaactt |
205 |
Q |
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| T |
52085092 |
tgtttggtttcatttagataaaggaaacttgcttcaaactt |
52085052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 52085215 - 52085155
Alignment:
| Q |
46 |
aaagcaatacaaatatattgtcattggcacttccaaaactccgtaaggttaatctctcagg |
106 |
Q |
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| T |
52085215 |
aaagcaatacatatatattgccattgacacttcctaaactccgcaaggttgatctctcagg |
52085155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 33708178 - 33708210
Alignment:
| Q |
79 |
caaaactccgtaaggttaatctctcaggtaatt |
111 |
Q |
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| T |
33708178 |
caaaactccgtaaggttaatctctccggtaatt |
33708210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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