View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_high_4 (Length: 549)

Name: NF11273_high_4
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_high_4
NF11273_high_4
[»] chr8 (15 HSPs)
chr8 (18-494)||(9475742-9476211)
chr8 (358-476)||(5700264-5700382)
chr8 (358-471)||(28345404-28345517)
chr8 (370-471)||(29918520-29918621)
chr8 (358-471)||(8545411-8545524)
chr8 (369-465)||(30903965-30904061)
chr8 (387-471)||(12468309-12468393)
chr8 (377-471)||(6388586-6388680)
chr8 (372-457)||(17108303-17108388)
chr8 (369-409)||(14186295-14186335)
chr8 (360-471)||(36274956-36275066)
chr8 (371-425)||(14155491-14155545)
chr8 (358-404)||(30481483-30481529)
chr8 (358-403)||(24870086-24870131)
chr8 (358-398)||(8031124-8031164)
[»] chr5 (21 HSPs)
chr5 (369-467)||(17153086-17153184)
chr5 (371-476)||(12457425-12457530)
chr5 (358-453)||(29664902-29664997)
chr5 (358-467)||(27900464-27900573)
chr5 (371-469)||(40187732-40187830)
chr5 (371-476)||(8020523-8020628)
chr5 (359-470)||(7350471-7350582)
chr5 (369-428)||(32575012-32575071)
chr5 (360-457)||(6810085-6810182)
chr5 (358-403)||(27088415-27088460)
chr5 (388-476)||(35584025-35584112)
chr5 (374-432)||(16366526-16366585)
chr5 (386-457)||(24207614-24207685)
chr5 (358-409)||(38006532-38006583)
chr5 (358-432)||(16311356-16311430)
chr5 (358-403)||(10127062-10127107)
chr5 (358-399)||(12712620-12712661)
chr5 (358-403)||(22694964-22695009)
chr5 (363-403)||(3573205-3573245)
chr5 (359-403)||(4920807-4920851)
chr5 (371-403)||(35194065-35194097)
[»] chr4 (28 HSPs)
chr4 (358-476)||(42907801-42907918)
chr4 (371-474)||(8843880-8843983)
chr4 (371-474)||(8856844-8856947)
chr4 (369-473)||(33616189-33616293)
chr4 (377-476)||(36306699-36306798)
chr4 (373-471)||(9929245-9929343)
chr4 (369-463)||(36919050-36919144)
chr4 (371-476)||(21714051-21714156)
chr4 (371-471)||(53906757-53906855)
chr4 (377-469)||(12075713-12075805)
chr4 (358-457)||(33516135-33516234)
chr4 (359-457)||(25298897-25298994)
chr4 (369-457)||(37384206-37384293)
chr4 (372-432)||(40420662-40420722)
chr4 (358-469)||(21956877-21956987)
chr4 (368-451)||(50376424-50376507)
chr4 (358-432)||(25941096-25941170)
chr4 (358-403)||(19534442-19534487)
chr4 (372-471)||(3505187-3505286)
chr4 (388-471)||(25265240-25265322)
chr4 (369-476)||(37926473-37926580)
chr4 (358-400)||(1724373-1724415)
chr4 (371-453)||(12505606-12505688)
chr4 (378-432)||(24474524-24474578)
chr4 (369-403)||(37349110-37349144)
chr4 (358-399)||(11172960-11173001)
chr4 (358-403)||(47550416-47550461)
chr4 (419-467)||(39086079-39086127)
[»] scaffold0244 (1 HSPs)
scaffold0244 (389-470)||(4673-4754)
[»] chr2 (17 HSPs)
chr2 (358-476)||(35248447-35248561)
chr2 (369-471)||(25210291-25210393)
chr2 (369-463)||(35965256-35965351)
chr2 (358-471)||(30696838-30696951)
chr2 (369-457)||(13954673-13954761)
chr2 (369-457)||(14095880-14095968)
chr2 (414-476)||(31600886-31600948)
chr2 (360-422)||(4961515-4961577)
chr2 (371-453)||(34544386-34544468)
chr2 (360-457)||(13531877-13531974)
chr2 (377-445)||(37309812-37309880)
chr2 (389-476)||(40734677-40734763)
chr2 (358-476)||(34214719-34214836)
chr2 (375-476)||(35409234-35409332)
chr2 (369-457)||(17845464-17845553)
chr2 (359-399)||(4427910-4427950)
chr2 (359-403)||(19104904-19104948)
[»] chr1 (18 HSPs)
chr1 (359-454)||(48125746-48125841)
chr1 (358-471)||(39219172-39219285)
chr1 (370-471)||(41477026-41477127)
chr1 (371-476)||(42729019-42729124)
chr1 (369-470)||(8880363-8880464)
chr1 (372-471)||(36421680-36421779)
chr1 (376-471)||(5293490-5293585)
chr1 (358-400)||(12494995-12495037)
chr1 (369-451)||(33293593-33293675)
chr1 (371-476)||(23719512-23719616)
chr1 (371-403)||(29871360-29871392)
chr1 (358-469)||(16903431-16903550)
chr1 (371-469)||(43513104-43513202)
chr1 (358-400)||(49741069-49741111)
chr1 (358-403)||(9982952-9982997)
chr1 (358-403)||(29936398-29936443)
chr1 (359-400)||(49250836-49250877)
chr1 (358-403)||(51421840-51421885)
[»] chr6 (14 HSPs)
chr6 (369-471)||(9402502-9402604)
chr6 (369-467)||(13768989-13769087)
chr6 (369-469)||(1947864-1947964)
chr6 (372-427)||(34346081-34346136)
chr6 (359-476)||(10925506-10925623)
chr6 (369-471)||(256565-256668)
chr6 (358-400)||(5863445-5863487)
chr6 (369-471)||(8320868-8320970)
chr6 (375-457)||(14321794-14321876)
chr6 (371-401)||(29341239-29341269)
chr6 (358-403)||(12141366-12141411)
chr6 (358-403)||(24602918-24602963)
chr6 (358-403)||(27738753-27738798)
chr6 (358-403)||(32853825-32853870)
[»] chr3 (11 HSPs)
chr3 (377-471)||(37032179-37032273)
chr3 (358-469)||(30904877-30904988)
chr3 (370-471)||(3414607-3414708)
chr3 (371-425)||(42243346-42243400)
chr3 (426-471)||(38347525-38347570)
chr3 (358-403)||(39728652-39728697)
chr3 (358-403)||(44172607-44172652)
chr3 (358-403)||(44179307-44179352)
chr3 (358-403)||(49580045-49580090)
chr3 (389-457)||(27937666-27937734)
chr3 (359-403)||(30682802-30682846)
[»] chr7 (14 HSPs)
chr7 (358-471)||(19440072-19440186)
chr7 (369-455)||(29292636-29292722)
chr7 (358-470)||(23475325-23475438)
chr7 (375-476)||(36251009-36251110)
chr7 (371-476)||(43550491-43550595)
chr7 (369-469)||(3773989-3774089)
chr7 (358-471)||(23533665-23533780)
chr7 (369-403)||(27850399-27850433)
chr7 (384-477)||(31345438-31345531)
chr7 (372-432)||(3157040-3157100)
chr7 (371-457)||(11472788-11472873)
chr7 (358-403)||(3920524-3920569)
chr7 (358-403)||(16866155-16866200)
chr7 (358-403)||(23328596-23328641)
[»] scaffold1322 (1 HSPs)
scaffold1322 (375-457)||(1038-1120)
[»] scaffold0157 (1 HSPs)
scaffold0157 (371-453)||(14789-14871)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 9475742 - 9476211
Alignment:
Q  18 taatcttactaatgatgggacaaagacacttagggacactatatccacgtacacatgcaattgttgttcacttcctgtggtttaaagtttgaacacatgg 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9475742 taatcttactaatgatgggacaaagacacttagagacactatatccacgtacacatgcaattgttgttcacttcttgtggtttaaagtttgaacacatgg 9475841  T
Q  118 acctcatcactttccagctctttggcacacatcccattcacttttacccattgccttcaaaaggcatcaaggtttacctctaggcatgacaacaaaatct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  9475842 acctcatcactttccagctctttggcacacatcccattcacttttacccattgccttcaaaaggcatcaaggtttacctctaggcatgacaacaaaacat 9475941  T
Q  218 atatttgtgggtatccgtccgaattaaacccattttgacggannnnnnncgtttcgattggatttggatatggatatggattttcccccgatttcaaaca 317  Q
    ||| || ||||||||||||||||  ||||||||||| |||          |||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  9475942 atacttctgggtatccgtccgaaccaaacccattttaacgagtttttcttgtttcgattgaatttggatatggatatggattttcccccgatttcaaaaa 9476041  T
Q  318 atagatacgggacaagtaacggggnnnnnnnnnnnnnnnncccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattacccctt 417  Q
    |  |||||||||||||||||||||                |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9476042 acggatacgggacaagtaacgggg-------atataaatacccacctcgaacccatacccaaacccatcccgaatgtagaaaattaaattattacccctt 9476134  T
Q  418 atatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtcacatgcacttatcatagt 494  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  9476135 atatataaatagaaattgaaactctaaattatttcactcacacagtcagagtcttagtcacacacacttatcatagt 9476211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 5700382 - 5700264
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||||| |||||||||||| || ||||||||||| |||||||| || ||||||||| ||||||||| ||||  |||||||||||| |||||||||     
T  5700382 cccacctcgaacccatacccaaatccatcccgaatgtataaaattaattttttaccccttttatataaattgaaaccgaaactctaaatcatttcactcc 5700283  T
Q  458 aacagtcagagtcttagtc 476  Q
     | ||||||||||||||||    
T  5700282 catagtcagagtcttagtc 5700264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 471
Target Start/End: Complemental strand, 28345517 - 28345404
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| |||||||||||||  |||| ||||||||||||| ||  ||||||||||| ||||||||||||||  |||| ||||||| ||||||||||    
T  28345517 cccaccccgaacccatacccaaacttgtcctgaatgtagaaaataaatatattaccccttttatataaatagaaaccgaaattctaaatcatttcactca 28345418  T
Q  458 aacagtcagagtct 471  Q
     ||||||| |||||    
T  28345417 cacagtcatagtct 28345404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 29918621 - 29918520
Alignment:
Q  370 ccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    |||||| |||||||||||| |||||| ||||| || |||||||| ||| |||||||||||||| | |||| |||||| |||||||||| ||||| |||||    
T  29918621 ccatacacaaacccgtcccaaatgtaaaaaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcactcacacagttagagt 29918522  T
Q  470 ct 471  Q
    ||    
T  29918521 ct 29918520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 471
Target Start/End: Original strand, 8545411 - 8545524
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| ||||||| ||||| |||||| |||||||||||| || |||  || |||| |||||||| ||||||  |||| |||||| ||||||||||    
T  8545411 cccaccccgaacccatactcaaactcgtcccaaatgtagaaaatcaatttacaactccttttatataaacagaaatccaaaccctaaatcatttcactca 8545510  T
Q  458 aacagtcagagtct 471  Q
    || || ||||||||    
T  8545511 aatagccagagtct 8545524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 465
Target Start/End: Complemental strand, 30904061 - 30903965
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtca 465  Q
    |||||||||||| | |||||||||||||||||| || ||||||| | || ||||||||||||||   ||||  ||||| |||||||||| |||||||    
T  30904061 cccatacccaaatcagtcccgaatgtagaaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcacacagtca 30903965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 12468309 - 12468393
Alignment:
Q  387 ccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    ||||||||||||||| || ||||||||| || |||||||| |||||   |||  ||||||||||||||||| || ||||||||||    
T  12468309 ccgaatgtagaaaatcaacttattaccctttttatataaagagaaacgcaaatcctaaattatttcactcatactgtcagagtct 12468393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 6388586 - 6388680
Alignment:
Q  377 caaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    ||||||| ||| ||||||||||||| || ||||||||| || |||||||| |||||   |||| |||||| |||||||||| ||| | |||||||    
T  6388586 caaacccatcctgaatgtagaaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcacacaattagagtct 6388680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 457
Target Start/End: Complemental strand, 17108388 - 17108303
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||||| | |||||| |||| ||||| || |||||| || || |||||||||||||| | |||| |||||| ||||||||||    
T  17108388 atacccaaactcatcccgattgtaaaaaatcaatttattatccattttatataaatagaaacttaaaccctaaataatttcactca 17108303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 14186335 - 14186295
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattat 409  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  14186335 cccatacccaaacccgtcctgaatgtagaaaattaatttat 14186295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Complemental strand, 36275066 - 36274956
Alignment:
Q  360 cacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaa 459  Q
    |||| ||| |||||||| ||||  |||||||||||| ||||| || ||| || ||||| ||||||||||||||    ||| |||||| |||||||||| |    
T  36275066 caccccgaacccatacctaaacatgtcccgaatgtaaaaaatcaatttactatcccttttatataaatagaaa-cccaaccctaaatcatttcactcaca 36274968  T
Q  460 cagtcagagtct 471  Q
    |||||| |||||    
T  36274967 cagtcaaagtct 36274956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 14155545 - 14155491
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataa 425  Q
    ||||||||||||| |||  |||||||||||| || |||||||||||| |||||||    
T  14155545 catacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 14155491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 30481483 - 30481529
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaa 404  Q
    |||||| ||| ||||||||||||| ||||||||||||| ||||||||    
T  30481483 cccaccccgaacccatacccaaactcgtcccgaatgtaaaaaattaa 30481529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 24870086 - 24870131
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| |||||||||||| ||||||||||| |||||| |||||||    
T  24870086 cccaccccgagcccatacctaaacccgtcccaaatgtaaaaaatta 24870131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 8031164 - 8031124
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaa 398  Q
    |||||||||| |||||||||||||||  |||||||||||||    
T  8031164 cccacctcgaacccatacccaaaccctacccgaatgtagaa 8031124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 17153184 - 17153086
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcaga 467  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||||  |||  |||||| |||||||||| |||||||||    
T  17153184 cccatacccaaacccgtcccgaatgtagaaaatcaatttattaccccttctagataaatagaaatccaaaacctaaataatttcactcacacagtcaga 17153086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 371 - 476
Target Start/End: Complemental strand, 12457530 - 12457425
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||   ||| ||||||| |||||||||| ||| |||  |||    
T  12457530 catacccaaacccgtcccgaatgtagaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcacacaatcatggtc 12457431  T
Q  471 ttagtc 476  Q
    ||||||    
T  12457430 ttagtc 12457425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 453
Target Start/End: Complemental strand, 29664997 - 29664902
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttca 453  Q
    ||||| |||| | ||||||||||||||||||||||||| ||||| || ||| |||||||| ||| |||||||||| | ||||||||||| ||||||    
T  29664997 cccacttcgaactcatacccaaacccgtcccgaatgtacaaaatcaatttactaccccttttatttaaatagaaactcaaactctaaatcatttca 29664902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 27900464 - 27900573
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||| ||||| |||||||||||| ||| |||||||||| ||||| || ||||| || ||| |||||||||||||| |||||| |||||| |||||| |||    
T  27900464 cccatctcgaacccatacccaaatccgccccgaatgtataaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtca 27900563  T
Q  458 aacagtcaga 467  Q
     ||| |||||    
T  27900564 cacattcaga 27900573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 40187732 - 40187830
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||||||| |||  |||  |||||| |||| ||||| | |||||||||    
T  40187732 catacccaaactcgtcccgaatatagaaaattaatttattacctcttttatataaatagtaatgaaaatcctaaatcattttactcacatagtcagagt 40187830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 476
Target Start/End: Complemental strand, 8020628 - 8020523
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||| ||||||||| | ||||||||||||| || ||| |||||||| ||||||||   |||   |||| |||||||||| |||||||||||||||||||    
T  8020628 catacgcaaacccgttctgaatgtagaaaatcaatttactaccccttttatataaaggaaaacctaaaccctaaattattccactcaaacagtcagagtc 8020529  T
Q  471 ttagtc 476  Q
    | ||||    
T  8020528 tcagtc 8020523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 470
Target Start/End: Original strand, 7350471 - 7350582
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaa 458  Q
    ||||| ||| |||||||  ||||||||| | ||||||||||||||| |||||| | ||| ||||||||||| ||| ||||| |||||| |||| |||||     
T  7350471 ccaccccgaacccatacttaaacccgtctcaaatgtagaaaattaatttattatcgcttttatataaatagtaatcgaaaccctaaatcattttactcac 7350570  T
Q  459 acagtcagagtc 470  Q
    | ||| ||||||    
T  7350571 atagttagagtc 7350582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 428
Target Start/End: Original strand, 32575012 - 32575071
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaata 428  Q
    |||| ||||||||||| ||||||||||||| || || |||||||||||| ||||||||||    
T  32575012 cccaaacccaaacccgccccgaatgtagaatatcaatttattaccccttttatataaata 32575071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 6810182 - 6810085
Alignment:
Q  360 cacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||| ||| ||||||||||||||| |||||||||  |||||| || ||||| |||||| ||||| ||||||||   ||||  ||||| ||||||||||    
T  6810182 caccccgaacccatacccaaacccatcccgaatggtgaaaatcaatttattgccccttttatatcaatagaaacccaaaccttaaatgatttcactca 6810085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 27088415 - 27088460
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||    
T  27088415 cccaccccgaacccatacccaaacccgtctcgaatgtagaaaatta 27088460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 35584112 - 35584025
Alignment:
Q  388 cgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtc 476  Q
    |||||||| ||||| || ||||||||| || |||||||||||||| | |||| |||||| ||||  |||| ||||||||||||| ||||    
T  35584112 cgaatgtacaaaatcaatttattacccttt-tatataaatagaaactcaaaccctaaatcattttgctcacacagtcagagtctcagtc 35584025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 16366526 - 16366585
Alignment:
Q  374 acccaaacccgtcccgaatgtagaaaattaaattattac-cccttatatataaatagaaa 432  Q
    |||||||| |||||||||||||||||||||  ||||||| ||||| |||||||| |||||    
T  16366526 acccaaactcgtcccgaatgtagaaaattattttattactcccttttatataaaaagaaa 16366585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 24207685 - 24207614
Alignment:
Q  386 cccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||||||||||||||||| ||||||  |||| |||||||||| ||| | |||| |||||| | ||||||||    
T  24207685 cccgaatgtagaaaattaatttattaatccttttatataaataaaaactaaaaccctaaataacttcactca 24207614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 38006532 - 38006583
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattat 409  Q
    |||||| ||| |||||||||||| ||||||||||||| ||||||||| ||||    
T  38006532 cccaccccgaacccatacccaaatccgtcccgaatgttgaaaattaatttat 38006583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 432
Target Start/End: Original strand, 16311356 - 16311430
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaa 432  Q
    |||||| ||| ||||||  |||||| ||| ||||||| |||||| || |||||| ||||| ||||||||||||||    
T  16311356 cccaccccgaacccatattcaaacctgtctcgaatgttgaaaatcaatttattatcccttttatataaatagaaa 16311430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 10127107 - 10127062
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  10127107 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 10127062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 12712620 - 12712661
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaa 399  Q
    |||||||||| |||||||||||||||  ||||||||||||||    
T  12712620 cccacctcgaacccatacccaaaccctacccgaatgtagaaa 12712661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 22694964 - 22695009
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  22694964 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 22695009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 3573245 - 3573205
Alignment:
Q  363 ctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    ||||| ||||||| ||||||| |||||||||||||||||||    
T  3573245 ctcgaacccatactcaaacccctcccgaatgtagaaaatta 3573205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 4920851 - 4920807
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    ||||| ||| |||||||||||||||||||| |||||| |||||||    
T  4920851 ccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 4920807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 35194065 - 35194097
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaatta 403  Q
    ||||| |||||||||||||||||||||||||||    
T  35194065 catactcaaacccgtcccgaatgtagaaaatta 35194097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 358 - 476
Target Start/End: Complemental strand, 42907918 - 42907801
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||||||||||||||||| ||||||||||||||||||| || ||| || | ||| |||||||||||||| | |||| |||||| ||||||||||    
T  42907918 cccaccccgagcccatacccaaactcgtcccgaatgtagaaaatcaatttacta-ctcttttatataaatagaaactcaaaccctaaatcatttcactca 42907820  T
Q  458 aacagtcagagtcttagtc 476  Q
     ||||| ||||||||||||    
T  42907819 tacagttagagtcttagtc 42907801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 371 - 474
Target Start/End: Original strand, 8843880 - 8843983
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||  ||||||||||||| | |||  |||||| |||||||||| ||||||| ||||    
T  8843880 catacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacacagtcacagtc 8843979  T
Q  471 ttag 474  Q
    ||||    
T  8843980 ttag 8843983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 371 - 474
Target Start/End: Original strand, 8856844 - 8856947
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||  ||||||||||||| | |||  |||||| |||||||||| ||||||| ||||    
T  8856844 catacccaaacccgtcgtgaatgtagaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcacacagtcacagtc 8856943  T
Q  471 ttag 474  Q
    ||||    
T  8856944 ttag 8856947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 33616189 - 33616293
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    |||||||| ||||| | || ||||||||||||| || |||||||||||| |||||||||| ||||  |||| |||||| |||||||||| ||||||||||    
T  33616189 cccataccaaaacctgccctgaatgtagaaaatcaatttattaccccttttatataaataaaaatcaaaaccctaaatcatttcactcacacagtcagag 33616288  T
Q  469 tctta 473  Q
    |||||    
T  33616289 tctta 33616293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 377 - 476
Target Start/End: Complemental strand, 36306798 - 36306699
Alignment:
Q  377 caaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtc 476  Q
    ||||||||||||||||||||||||| || |||||||||||| ||||||||||||||| ||||   ||||| |||||||| | ||| | ||||||| ||||    
T  36306798 caaacccgtcccgaatgtagaaaatcaatttattaccccttttatataaatagaaatcgaaatcataaatcatttcacttacacaattagagtctcagtc 36306699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 9929245 - 9929343
Alignment:
Q  373 tacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    ||||||||  ||||| ||| ||||||||| || |||||||| |||  ||||||||| ||| ||||||||||||| |||||||||| |||||||||||||    
T  9929245 tacccaaaatcgtcctgaaagtagaaaatcaatttattacctcttccatataaatataaactgaaactctaaataatttcactcacacagtcagagtct 9929343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 463
Target Start/End: Complemental strand, 36919144 - 36919050
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagt 463  Q
    ||||||||||||| ||| ||| ||||||||||| |  |||||||| ||| |||||||||||||| | ||||||||||| |||||||||| |||||    
T  36919144 cccatacccaaactcgttccggatgtagaaaatcagtttattaccacttttatataaatagaaactcaaactctaaatcatttcactcacacagt 36919050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 21714051 - 21714156
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    |||||| |||| |||| | ||||||||||||||| |||||||| ||| |||||||||||||| | |||| |||||| |||||||| | ||| | ||||||    
T  21714051 catacctaaactcgtctcaaatgtagaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcacttacacaattagagtc 21714150  T
Q  471 ttagtc 476  Q
    | ||||    
T  21714151 tcagtc 21714156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 471
Target Start/End: Original strand, 53906757 - 53906855
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    |||||| ||||||||||| ||||||||||  | || ||||||||||| ||||||||||||||| |||||  ||| |||||||||||| | ||||| ||||    
T  53906757 catacctaaacccgtcccaaatgtagaaa--tcaaatattaccccttttatataaatagaaatcgaaaccttaagttatttcactcacatagtcaaagtc 53906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 12075713 - 12075805
Alignment:
Q  377 caaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    ||||| ||||| ||||||||||||| || ||||||||| || |||||||||||||| | ||||||| ||| ||||||| || ||||| |||||    
T  12075713 caaactcgtccggaatgtagaaaatcaatttattacccattttatataaatagaaactaaaactctgaatcatttcacccacacagttagagt 12075805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 457
Target Start/End: Original strand, 33516135 - 33516234
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| || ||||||||||||||| | |||||| ||||| ||  ||||||||||| |||||||||| ||| | |||| |||||| ||||||||||    
T  33516135 cccaccccgaacctatacccaaacccgtctcaaatgtaaaaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactca 33516234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 457
Target Start/End: Original strand, 25298897 - 25298994
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||| ||| ||||||||||||||||| || ||||| |||||| || |||| ||||||| | ||||||||| || | ||||||||||| ||||||||||    
T  25298897 ccaccccgaacccatacccaaacccgtaccaaatgttgaaaatcaatttatcaccccttttttataaatag-aactcaaactctaaatcatttcactca 25298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 37384293 - 37384206
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||||| |||||||||||| ||| |||||| | || |||||| ||||| ||||||||||||| || |||| |||||| ||||||||||    
T  37384293 cccatacacaaacccgtcccaaatatagaaa-tcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactca 37384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 40420662 - 40420722
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaa 432  Q
    ||||||||||||  |||||||||||||||| |  |||||||||||| ||||||||||||||    
T  40420662 atacccaaacccaccccgaatgtagaaaatcactttattaccccttttatataaatagaaa 40420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 469
Target Start/End: Original strand, 21956877 - 21956987
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| ||||||||||||| |||  |||||||||||||| || |||||| ||||| |||||||||| |||   |||| |||||| |||||| ||     
T  21956877 cccaccccgaacccatacccaaactcgttacgaatgtagaaaatcaatttatta-cccttttatataaataaaaacccaaaccctaaatcatttcattcg 21956975  T
Q  458 aacagtcagagt 469  Q
     |||||||||||    
T  21956976 cacagtcagagt 21956987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 50376424 - 50376507
Alignment:
Q  368 gcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattattt 451  Q
    ||||| |||| ||||||| ||||||||||||||| || |||||  || || |||||||||||||| | |||| |||||||||||    
T  50376424 gcccacacccgaacccgttccgaatgtagaaaatcaatttattttccattttatataaatagaaactaaaacgctaaattattt 50376507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 25941170 - 25941096
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaa 432  Q
    |||||| ||| |||||||||||||  ||| || ||||||||||| || |||| ||||||| ||||||||||||||    
T  25941170 cccaccccgaacccatacccaaacatgtctcggatgtagaaaatcaatttataaccccttttatataaatagaaa 25941096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 19534487 - 19534442
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||||||| | |||||||||||||||| ||||||||||||||||    
T  19534487 cccacctcgaactcatacccaaacccgtcacgaatgtagaaaatta 19534442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 3505286 - 3505187
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    |||| |||||| || ||| || |||||||| || ||||||| |||| ||| |||||||||||| |||||||| || |||||| ||| || || |||||||    
T  3505286 atacacaaacctgttccgcatatagaaaatcaatttattactccttttatctaaatagaaattcaaactctagatcatttcattcacaccgttagagtct 3505187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 25265240 - 25265322
Alignment:
Q  388 cgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    |||||||||||||| || |||||| || || |||||||||||||| | ||| ||||||| |||| ||||| ||| |||||||||    
T  25265240 cgaatgtagaaaatcaatttattatcc-ttctatataaatagaaactcaaattctaaatcattttactcacacaatcagagtct 25265322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 476
Target Start/End: Complemental strand, 37926580 - 37926473
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    ||||||||||||| | ||| |||||||| ||||||| |||||| |||||  |||| ||| |||| | ||||| ||||| |||| ||||| ||||| | ||    
T  37926580 cccatacccaaactcatcctgaatgtagtaaattaatttattatccctttcatatcaattgaaactcaaactttaaatcatttaactcacacagttaaag 37926481  T
Q  469 tcttagtc 476  Q
    ||| ||||    
T  37926480 tctcagtc 37926473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 1724373 - 1724415
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaa 400  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  1724373 cccaccccgaacccatacccaaacccgtcccgaatgcagaaaa 1724415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 12505606 - 12505688
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttca 453  Q
    ||||||||||||||||| ||| ||| || || || ||||| |||||| |||||||||||||| | ||||  ||||| ||||||    
T  12505606 catacccaaacccgtcctgaaggtaaaacatcaatttatttccccttttatataaatagaaacttaaacattaaatcatttca 12505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 24474524 - 24474578
Alignment:
Q  378 aaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaa 432  Q
    |||| ||||||||||||| ||||| ||||| ||| ||||| ||||||||||||||    
T  24474524 aaactcgtcccgaatgtaaaaaatcaaatttttatcccttttatataaatagaaa 24474578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 37349144 - 37349110
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    ||||||||||||||||||||||||| |||||||||    
T  37349144 cccatacccaaacccgtcccgaatgcagaaaatta 37349110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 11173001 - 11172960
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaa 399  Q
    |||||| ||| ||||||||||||||| |||||||||||||||    
T  11173001 cccaccccgaacccatacccaaacccttcccgaatgtagaaa 11172960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 47550416 - 47550461
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  47550416 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 47550461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 39086127 - 39086079
Alignment:
Q  419 tatataaatagaaattgaaactctaaattatttcactcaaacagtcaga 467  Q
    |||||||||||||| | |||| |||||| |||||||||| |||||||||    
T  39086127 tatataaatagaaacttaaaccctaaatcatttcactcacacagtcaga 39086079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 389 - 470
Target Start/End: Original strand, 4673 - 4754
Alignment:
Q  389 gaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||  ||||||||||| |||||||||| ||||||||||||    
T  4673 gaatgtagaaaatcaaattataaccccttttatataaatagaaatcaaaactctaaatcatttcactcacacagtcagagtc 4754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 358 - 476
Target Start/End: Original strand, 35248447 - 35248561
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| ||||||||||||||||||| |||||||||||| || |    |||||||| |||||||||||||| |||||| |||||| ||||||||||    
T  35248447 cccaccccgaacccatacccaaacccgtcctgaatgtagaaaaatata----taccccttttatataaatagaaaatgaaaccctaaatcatttcactca 35248542  T
Q  458 aacagtcagagtcttagtc 476  Q
     |||| |||||||| ||||    
T  35248543 cacagacagagtctcagtc 35248561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 25210393 - 25210291
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    |||||||| |||||| ||||||||||||||||| || || |||||| || |||||||||||||| | |||| |||||| |||||||||| |||||| |||    
T  25210393 cccataccaaaacccctcccgaatgtagaaaatcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcacacagtcggag 25210294  T
Q  469 tct 471  Q
    |||    
T  25210293 tct 25210291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 369 - 463
Target Start/End: Complemental strand, 35965351 - 35965256
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatata-taaatagaaattgaaactctaaattatttcactcaaacagt 463  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||| |||| ||||||| ||||||| |  ||||| |||||||||| |||||    
T  35965351 cccatacccaaacccgtcccgaatgtagaaaatcaatttattgccccttttatactaaataggaattgaatccataaatcatttcactcatacagt 35965256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 471
Target Start/End: Complemental strand, 30696951 - 30696838
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| | ||||||||||||  |||| |||||| ||||| || ||||||||| || |||||||||||||||| |||| |||||| || |||||||    
T  30696951 cccaccccgaactcatacccaaacctatcccaaatgtaaaaaatcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcactca 30696852  T
Q  458 aacagtcagagtct 471  Q
     ||||| |||||||    
T  30696851 cacagttagagtct 30696838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 13954761 - 13954673
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||||| |||||||||| |||| ||||||||| || |||||||| ||| |||||||||||||| |  ||| |||||| ||||||||||    
T  13954761 cccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactca 13954673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 14095968 - 14095880
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||||| |||||||||| |||| ||||||||| || |||||||| ||| |||||||||||||| |  ||| |||||| ||||||||||    
T  14095968 cccatactcaaacccgtctcgaacgtagaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactca 14095880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 476
Target Start/End: Original strand, 31600886 - 31600948
Alignment:
Q  414 ccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtc 476  Q
    |||| |||||||||||||| | ||||||||||| |||||||||| ||||| ||||||||||||    
T  31600886 ccttttatataaatagaaactcaaactctaaatcatttcactcatacagttagagtcttagtc 31600948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 4961515 - 4961577
Alignment:
Q  360 cacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatata 422  Q
    |||||||| ||||||||||||| |||||||||| |||||||| || |||||||| ||| ||||    
T  4961515 cacctcgaacccatacccaaactcgtcccgaatatagaaaatgaatttattacctcttttata 4961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 34544386 - 34544468
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttca 453  Q
    ||||| ||||||| |||||||||||||||||  | ||||||||| || |||||||||| ||| | |||| |||||| ||||||    
T  34544386 catactcaaacccctcccgaatgtagaaaatctatttattacccattttatataaataaaaactcaaaccctaaataatttca 34544468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 13531974 - 13531877
Alignment:
Q  360 cacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||| ||| |||| || |||||||| |||  ||||||||||| || |||||| || || |||||||||||||| | |||| |||||| ||||||||||    
T  13531974 caccccgaacccacactcaaacccgccccacatgtagaaaatcaatttattatccattttatataaatagaaactcaaaccctaaatcatttcactca 13531877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 37309812 - 37309880
Alignment:
Q  377 caaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaa 445  Q
    ||||||||||||||| ||||||||| || |||| | ||||| || ||||||||||||| |||| |||||    
T  37309812 caaacccgtcccgaaggtagaaaatcaatttatcatcccttttacataaatagaaattcaaaccctaaa 37309880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 476
Target Start/End: Original strand, 40734677 - 40734763
Alignment:
Q  389 gaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtc 476  Q
    ||||| |||||||||| ||| |||| |||| ||||||||| |||   |||| |||||| |||||||||| ||||||||||||| ||||    
T  40734677 gaatgcagaaaattaatttactacctctta-atataaataaaaaccaaaaccctaaatcatttcactcacacagtcagagtctcagtc 40734763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 476
Target Start/End: Original strand, 34214719 - 34214836
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||| |||| | ||||| |||||||||||   ||||||||| | || ||||| |||  | |||||||||||||| | || |||||||| |||||||| |    
T  34214719 cccacttcgaactcatactcaaacccgtcctagatgtagaaagtcaatttattgccctgtttatataaatagaaactcaa-ctctaaatcatttcactaa 34214817  T
Q  458 aacagtcagagtcttagtc 476  Q
     ||||||||||||| ||||    
T  34214818 cacagtcagagtctcagtc 34214836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 35409234 - 35409332
Alignment:
Q  375 cccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttag 474  Q
    ||||||||||||| ||||||| ||||| || || |||||| |||||||  |||| |||   |||||||||| ||||||||| | ||||||||||||| ||    
T  35409234 cccaaacccgtcc-gaatgtataaaatcaattttttacccgttatata--aataaaaacccaaactctaaactatttcacttacacagtcagagtctcag 35409330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 17845464 - 17845553
Alignment:
Q  369 cccatacccaaacccgtcccgaatgt-agaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||||||||||||| ||||||| | ||||| || |||||| || || |||||||||||||| |  ||  |||||| ||||||||||    
T  17845464 cccatacccaaacccgtctcgaatgtaaaaaaatcaatttattatcctttttatataaatagaaactccaaacctaaatcatttcactca 17845553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 4427950 - 4427910
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaa 399  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  4427950 ccacctcgaacccatacccaaaccctacccgaatgtagaaa 4427910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 19104904 - 19104948
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||||||  |||||| ||||||||||||||||| |||||||||    
T  19104904 ccacctcgaatccatactcaaacccgtcccgaatgcagaaaatta 19104948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 454
Target Start/End: Original strand, 48125746 - 48125841
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcac 454  Q
    ||||| ||| ||||||||||||| |||| |||||||||||||| || ||| |||| ||| |||||||||||||| | |||||||||||||||||||    
T  48125746 ccaccccgaacccatacccaaactcgtcgcgaatgtagaaaatcaatttactaccgcttttatataaatagaaactcaaactctaaattatttcac 48125841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 471
Target Start/End: Complemental strand, 39219285 - 39219172
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| ||||||||||||| ||| |  ||||||||||||||| |||||||| ||| |||||||||||||| | |||| |||||| ||||| ||||    
T  39219285 cccaccccgaacccatacccaaactcgttctaaatgtagaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctca 39219186  T
Q  458 aacagtcagagtct 471  Q
     ||||||| |||||    
T  39219185 cacagtcacagtct 39219172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 41477026 - 41477127
Alignment:
Q  370 ccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    |||||||||||||||||||||| | ||||||| || || |||||| || |||||||| |||||| ||||| ||||||||||||| ||| ||||||| |||    
T  41477026 ccatacccaaacccgtcccgaaagcagaaaatcaatttgttaccctttttatataaagagaaatggaaaccctaaattatttcattcacacagtcaaagt 41477125  T
Q  470 ct 471  Q
    ||    
T  41477126 ct 41477127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 42729019 - 42729124
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||||||||| ||| | ||||||||||||| || |||| | ||||| |||||||||||||| | | || |||||| |||||||||| ||||||||||||    
T  42729019 catacccaaacacgttctgaatgtagaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcacacagtcagagtc 42729118  T
Q  471 ttagtc 476  Q
    | ||||    
T  42729119 tcagtc 42729124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 470
Target Start/End: Complemental strand, 8880464 - 8880363
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    |||||||||||||||||||| ||||   ||||| || |||||||||||| | |||||||||||| | ||||| ||||| |||||||||| | ||| ||||    
T  8880464 cccatacccaaacccgtcccaaatgctaaaaataaatttattaccccttttttataaatagaaactcaaactttaaatcatttcactcacaaagttagag 8880365  T
Q  469 tc 470  Q
    ||    
T  8880364 tc 8880363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 471
Target Start/End: Complemental strand, 36421779 - 36421680
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    |||||||||| |||| ||||| |||||||| || |||||| ||||  |||||||||| ||| |  |||||||||| |||||| ||| |||||||||||||    
T  36421779 atacccaaactcgtctcgaatatagaaaatcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcattcacacagtcagagtct 36421680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 471
Target Start/End: Original strand, 5293490 - 5293585
Alignment:
Q  376 ccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    |||||| |||||||||||| |||| | || |||||| | ||| |||||||||||||| | |||||| ||| ||||||| ||| |||| ||||||||    
T  5293490 ccaaactcgtcccgaatgttgaaagtcaatttattatcacttttatataaatagaaactcaaactcaaaactatttcaatcacacagccagagtct 5293585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 12495037 - 12494995
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaa 400  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  12495037 cccacctcgaacccatacccaaacccgtcccaaatgtagaaaa 12494995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 451
Target Start/End: Original strand, 33293593 - 33293675
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattattt 451  Q
    ||||||||||||| ||| ||||||||||||||| || ||| ||||| || ||||| |||||||| | |||| |||||| ||||    
T  33293593 cccatacccaaactcgttccgaatgtagaaaatcaatttagtacccattttatatcaatagaaactcaaaccctaaatcattt 33293675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 476
Target Start/End: Complemental strand, 23719616 - 23719512
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||| ||||| ||||||||||||| ||| | || ||| ||||| || |||||||||||||| | ||||| ||||| |||||||| | |||||| |||||    
T  23719616 catactcaaactcgtcccgaatgtacaaa-tcaatttactaccctttttatataaatagaaactcaaactataaatcatttcactaacacagtctgagtc 23719518  T
Q  471 ttagtc 476  Q
    | ||||    
T  23719517 tcagtc 23719512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 29871360 - 29871392
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||||||||||||||||||||||||||||||    
T  29871360 catacccaaacccgtcccgaatgtagaaaatta 29871392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 469
Target Start/End: Complemental strand, 16903550 - 16903431
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaa--------ttattaccccttatatataaatagaaattgaaactctaaattat 449  Q
    |||||| ||| | ||||||||||||||||||||||||| ||||  |||        ||||| ||| || |||||||||| ||| | |||| |||||||||    
T  16903550 cccaccccgaactcatacccaaacccgtcccgaatgtaaaaaaaaaaaaaatcaatttattgccctttttatataaatataaactcaaaccctaaattat 16903451  T
Q  450 ttcactcaaacagtcagagt 469  Q
    |||||||| ||| |||||||    
T  16903450 ttcactcacacaatcagagt 16903431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 43513104 - 43513202
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    ||||| |||||||||  |||||||| ||||| || |||| || | || |||||||||||||| | |||| |||||| |||||||||  ||| |||||||    
T  43513104 catactcaaacccgtttcgaatgtaaaaaatcaatttataactctttttatataaatagaaactcaaaccctaaataatttcactcgtacaatcagagt 43513202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 49741069 - 49741111
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaa 400  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  49741069 cccaccccgaacccatacccaaacccgtcccgaatgcagaaaa 49741111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 9982952 - 9982997
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| ||||||||||||||| ||||||||| |||||||||    
T  9982952 cccaccccgaacccatacccaaacccatcccgaatgcagaaaatta 9982997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 29936443 - 29936398
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  29936443 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 29936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 49250836 - 49250877
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaa 400  Q
    ||||||||| |||||||||||||||||||| |||||| ||||    
T  49250836 ccacctcgaacccatacccaaacccgtcccaaatgtaaaaaa 49250877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 51421885 - 51421840
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  51421885 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 51421840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 471
Target Start/End: Complemental strand, 9402604 - 9402502
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    ||||||| |||||| ||| |||||||||||||| || ||| |||||| | ||||||||||||||   |||| |||||| |||||||||| ||||||||||    
T  9402604 cccatactcaaacctgtctcgaatgtagaaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcacacagtcagag 9402505  T
Q  469 tct 471  Q
    |||    
T  9402504 tct 9402502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 13769087 - 13768989
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcaga 467  Q
    |||||| |||||||||||| ||||||||||||| || ||||||| |||| ||||||||| |||| | ||||  |||||||||||| | | |||||||||    
T  13769087 cccatatccaaacccgtcctgaatgtagaaaatcaatttattactccttttatataaattgaaactcaaaccataaattatttcagtaacacagtcaga 13768989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 469
Target Start/End: Original strand, 1947864 - 1947964
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    ||||||| ||||| ||| || |||||||||||| || |||||||||||| |||||||||| ||||  |||| |||| | |||  ||||| ||||||||||    
T  1947864 cccatactcaaactcgttccaaatgtagaaaatcaatttattaccccttttatataaataaaaatccaaaccctaagtcattatactcacacagtcagag 1947963  T
Q  469 t 469  Q
    |    
T  1947964 t 1947964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 34346081 - 34346136
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaat 427  Q
    ||||||||| |||| |||||||||||||||||| ||||||| |||| |||||||||    
T  34346081 atacccaaatccgttccgaatgtagaaaattaatttattactccttttatataaat 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 10925506 - 10925623
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaa 458  Q
    ||||| ||| |||||||| |||| | | ||||||||| |||| ||| ||||||  |||| |||||||||||||  |||||| |||||| |||||||| |     
T  10925506 ccaccccgaacccatacctaaactcattccgaatgtaaaaaaataatttattattccttttatataaatagaatctgaaaccctaaatcatttcactaac 10925605  T
Q  459 acagtcagagtcttagtc 476  Q
    ||| ||| ||| ||||||    
T  10925606 acaatcaaagttttagtc 10925623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 256565 - 256668
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatat-aaatagaaattgaaactctaaattatttcactcaaacagtcaga 467  Q
    ||||||||||||||| |||  |||||||||||| || ||| |||||||| ||| | |||||||||   ||||||||||||| |||  ||| | |||||||    
T  256565 cccatacccaaacccctcctaaatgtagaaaatcaatttactaccccttttatttaaaatagaaacacaaactctaaattaattctttcacatagtcaga 256664  T
Q  468 gtct 471  Q
    ||||    
T  256665 gtct 256668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 5863445 - 5863487
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaa 400  Q
    |||||||||| |||||||||||||||||||| |||||| ||||    
T  5863445 cccacctcgaacccatacccaaacccgtcccaaatgtaaaaaa 5863487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 471
Target Start/End: Original strand, 8320868 - 8320970
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    |||||||||| |||||| | ||||| | ||||| || ||||||| || | ||  |||||||||| | |||| |||||| |||||||| | ||||||||||    
T  8320868 cccatacccagacccgttctgaatgcaaaaaatcaacttattactccatttacgtaaatagaaacttaaaccctaaatcatttcacttacacagtcagag 8320967  T
Q  469 tct 471  Q
    |||    
T  8320968 tct 8320970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 14321876 - 14321794
Alignment:
Q  375 cccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||| |||  |||||||||||||||| ||||||||  || |||||||||||||| | |||   ||||| ||||||||||    
T  14321876 cccaaacctgtcatgaatgtagaaaattaatttattacctattttatataaatagaaactcaaatcttaaatcatttcactca 14321794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 401
Target Start/End: Complemental strand, 29341269 - 29341239
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaat 401  Q
    |||||||||||||||||||||||||||||||    
T  29341269 catacccaaacccgtcccgaatgtagaaaat 29341239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 12141411 - 12141366
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  12141411 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 12141366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 24602918 - 24602963
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| ||||||||||||||| || ||||||||||||||||    
T  24602918 cccaccccgaacccatacccaaacccatcacgaatgtagaaaatta 24602963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 27738798 - 27738753
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  27738798 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 27738753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 32853870 - 32853825
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  32853870 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 32853825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 37032179 - 37032273
Alignment:
Q  377 caaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    ||||||| ||| |||||||||||||||| ||||||||| || |||||||||| ||| | |||| |||||| |||||||||| ||| |||||||||    
T  37032179 caaacccatcctgaatgtagaaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactcatacaatcagagtct 37032273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 358 - 469
Target Start/End: Original strand, 30904877 - 30904988
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||| ||| |||||||||||| ||||| ||||||||| |||| || ||| |||||||| ||||||||||||||   |||| || ||| ||||||||||    
T  30904877 cccaccccgaacccatacccaaatccgtctcgaatgtaggaaatcaatttactaccccttttatataaatagaaacccaaacccttaatcatttcactca 30904976  T
Q  458 aacagtcagagt 469  Q
     | |||||||||    
T  30904977 tatagtcagagt 30904988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 471
Target Start/End: Original strand, 3414607 - 3414708
Alignment:
Q  370 ccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagt 469  Q
    |||||| ||||||||| || |||||||||||| |  ||| |||||||| | |||||||| |||| ||||| |||||| |||||||||| | ||||| |||    
T  3414607 ccatactcaaacccgtacctaatgtagaaaatcattttaataccccttttctataaataaaaatcgaaaccctaaatcatttcactcacatagtcaaagt 3414706  T
Q  470 ct 471  Q
    ||    
T  3414707 ct 3414708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 425
Target Start/End: Complemental strand, 42243400 - 42243346
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataa 425  Q
    ||||||||||||| |||  |||||||||||| || |||||||||||| |||||||    
T  42243400 catacccaaacccatcctaaatgtagaaaatcaatttattaccccttttatataa 42243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 38347570 - 38347525
Alignment:
Q  426 atagaaattgaaactctaaattatttcactcaaacagtcagagtct 471  Q
    ||||||| | ||||||||||| |||||||||| |||||||||||||    
T  38347570 atagaaactcaaactctaaatcatttcactcatacagtcagagtct 38347525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 39728697 - 39728652
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  39728697 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 39728652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 44172652 - 44172607
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  44172652 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 44172607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 44179352 - 44179307
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  44179352 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 44179307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 49580090 - 49580045
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||||||| ||||||| |||||||||||| |||||| |||||||    
T  49580090 cccacctcgaacccatactcaaacccgtcccaaatgtaaaaaatta 49580045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 27937734 - 27937666
Alignment:
Q  389 gaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||| ||||||| |||||||  ||| ||||||||||||||   |||| |||||| ||||||||||    
T  27937734 gaatgtaggaaattaatttattacagcttttatataaatagaaacctaaaccctaaatcatttcactca 27937666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 30682846 - 30682802
Alignment:
Q  359 ccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    ||||||||| || |||| ||||||||||| |||||||||||||||    
T  30682846 ccacctcgaacctatactcaaacccgtcctgaatgtagaaaatta 30682802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 471
Target Start/End: Original strand, 19440072 - 19440186
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgt-agaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactc 456  Q
    ||||| |||| |||||||||||||||||||||||||| | ||||| || |||  |||||||   ||||||||||||   ||||||||||| |||||||||    
T  19440072 cccacttcgaacccatacccaaacccgtcccgaatgtaaaaaaatcaatttaccacccctttggtataaatagaaacccaaactctaaatcatttcactc 19440171  T
Q  457 aaacagtcagagtct 471  Q
    | | |||||||||||    
T  19440172 acatagtcagagtct 19440186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 455
Target Start/End: Complemental strand, 29292722 - 29292636
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcact 455  Q
    |||||||| |||| |||| |||||||||||||| || ||| |||||||| |||||||| ||||||  |||| |||||||||||||||    
T  29292722 cccatacctaaactcgtctcgaatgtagaaaatcaatttactaccccttttatataaagagaaatccaaaccctaaattatttcact 29292636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 470
Target Start/End: Original strand, 23475325 - 23475438
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgt-agaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactc 456  Q
    ||||| |||| |||||||||||||||||||||||||| | ||||| || ||| ||||| || | |||||||| |||   ||||||||||| |||||||||    
T  23475325 cccacttcgaacccatacccaaacccgtcccgaatgtaaaaaaatcaatttactacccgttttgtataaataaaaacccaaactctaaatcatttcactc 23475424  T
Q  457 aaacagtcagagtc 470  Q
    | | ||||||||||    
T  23475425 acatagtcagagtc 23475438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 36251009 - 36251110
Alignment:
Q  375 cccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttag 474  Q
    ||||||||||||||||||||||||||| || |||||||   || |||||||||| ||| | ||||||||||  |||||||| | ||||||||| ||| ||    
T  36251009 cccaaacccgtcccgaatgtagaaaatcaatttattacatattttatataaataaaaactaaaactctaaaccatttcacttatacagtcagactctcag 36251108  T
Q  475 tc 476  Q
    ||    
T  36251109 tc 36251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 476
Target Start/End: Original strand, 43550491 - 43550595
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtc 470  Q
    ||||| ||||||||||| |||||| |||| |  | |||||||||||| ||||||||||||||   |||| |||||| ||||||||||||  |||||||||    
T  43550491 catacacaaacccgtcctgaatgtggaaagtctatttattaccccttctatataaatagaaacccaaaccctaaatcatttcactcaaa-tgtcagagtc 43550589  T
Q  471 ttagtc 476  Q
    | ||||    
T  43550590 tcagtc 43550595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 3774089 - 3773989
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagag 468  Q
    ||||||| |||| ||||||||||| |||||||| || |||||||||||| ||||||| ||| ||   |||| | |||| |||| ||||| ||||||||||    
T  3774089 cccatactcaaatccgtcccgaatttagaaaatcaatttattaccccttttatataattaggaacccaaacgcaaaatcattttactcacacagtcagag 3773990  T
Q  469 t 469  Q
    |    
T  3773989 t 3773989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 471
Target Start/End: Original strand, 23533665 - 23533780
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaattaaatt--attaccccttatatataaatagaaattgaaactctaaattatttcact 455  Q
    ||||| |||| ||||||||||||| ||||||||||||| |||| | ||||   | ||||||| | ||||| ||||||   ||||||||||| ||||||||    
T  23533665 cccacttcgaacccatacccaaactcgtcccgaatgtaaaaaaatcaatttactaaccccttttgtataattagaaacccaaactctaaatcatttcact 23533764  T
Q  456 caaacagtcagagtct 471  Q
    || | |||||||||||    
T  23533765 cacatagtcagagtct 23533780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 27850399 - 27850433
Alignment:
Q  369 cccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||||||||||||||||||||||||||||||||    
T  27850399 cccatacccaaacccgtcccgaatgtagaaaatta 27850433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 477
Target Start/End: Complemental strand, 31345531 - 31345438
Alignment:
Q  384 gtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactcaaacagtcagagtcttagtca 477  Q
    |||||||||||| ||||| || ||| ||||  || |||||||||||||| | |||||||| || |||||||||| ||| ||| ||||| |||||    
T  31345531 gtcccgaatgtaaaaaatcaatttactaccatttttatataaatagaaactcaaactctatatcatttcactcacacaatcaaagtctcagtca 31345438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 3157100 - 3157040
Alignment:
Q  372 atacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaa 432  Q
    ||||||||||||||||| ||  |||||||| || |||||||||||  ||||||||||||||    
T  3157100 atacccaaacccgtcccaaacatagaaaatcaatttattacccctactatataaatagaaa 3157040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 457
Target Start/End: Original strand, 11472788 - 11472873
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    |||||||||| ||||||| |||| ||||||| || ||||||  |||| ||||||||||||||   |||| |||||| ||||||||||    
T  11472788 catacccaaatccgtcccaaatg-agaaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactca 11472873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 3920569 - 3920524
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||| | ||||||||||||||||||||    
T  3920569 cccaccccgaacccatacccaaaactgtcccgaatgtagaaaatta 3920524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 16866200 - 16866155
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| |||||||||||||||||||| |||||| |||||||    
T  16866200 cccaccccgaacccatacccaaacccgtcccaaatgtaaaaaatta 16866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 23328641 - 23328596
Alignment:
Q  358 cccacctcgagcccatacccaaacccgtcccgaatgtagaaaatta 403  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||    
T  23328641 cccaccccgatcctatacccaaacccgtcccgaatggagaaaatta 23328596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 1120 - 1038
Alignment:
Q  375 cccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttcactca 457  Q
    ||||||||||||  |||||||||||||||| ||||||||| || |||||||||||||| | |||   ||||| ||||||||||    
T  1120 cccaaacccgtcatgaatgtagaaaattaatttattacccattttatataaatagaaactcaaatcttaaatcatttcactca 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 453
Target Start/End: Complemental strand, 14871 - 14789
Alignment:
Q  371 catacccaaacccgtcccgaatgtagaaaattaaattattaccccttatatataaatagaaattgaaactctaaattatttca 453  Q
    ||||||||||||||||| ||| ||| || || || ||||| |||||| |||||||||||||| | ||||  ||||| ||||||    
T  14871 catacccaaacccgtcctgaaggtaaaacatcaatttatttccccttttatataaatagaaacttaaacattaaatcatttca 14789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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