View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11273_high_5 (Length: 495)
Name: NF11273_high_5
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 31241319 - 31240859
Alignment:
| Q |
18 |
cacattaatgaatttaacctcatcactcattaatgcactcaacctctcgattttgtactactcggtactcacattaactttgctgtcttctcagaagcag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241319 |
cacattaatgaatttaacctcattactcattaatgcatttaacctctcgattttgtactactcggtactcacattaactttgctgtcttctcagaagcag |
31241220 |
T |
|
| Q |
118 |
cagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241219 |
cagagcaattgtatgccacccaactttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgt |
31241120 |
T |
|
| Q |
218 |
tcatgccgccattcaacgtctttcgaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241119 |
tcatgccgccattcaacgtctttcgaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcat |
31241020 |
T |
|
| Q |
318 |
gttcctttctattttattagttgtaatgaatattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtatattacacttc |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31241019 |
gttcc-ttctattttattagttgtaatgaatattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtatattacacttc |
31240921 |
T |
|
| Q |
418 |
acatgtatttctttatggattcaatagttatgtcgaggtattcatgcagattctcctgatgt |
479 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31240920 |
acatgtatatctttatggattcaatagttatgtcgaggtattcatgcagattctcctaatgt |
31240859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 31255338 - 31255194
Alignment:
| Q |
96 |
tttgctgtcttctcagaagcagcagagcaattgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctc |
195 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
31255338 |
tttgttgtcttctcagagccaccagagcaattgtatgccacccagcttacacagcttcaagagatgggattctttgacacacaagagaacataagggctc |
31255239 |
T |
|
| Q |
196 |
ttattgccacttcaggggatgttcatgccgccattcaacgtcttt |
240 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| || ||||||||| |
|
|
| T |
31255238 |
ttattgccacttcagggaatgttcatgcggccgttgaacgtcttt |
31255194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 142 - 472
Target Start/End: Complemental strand, 7206158 - 7205839
Alignment:
| Q |
142 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgccgccattcaacgtctttc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7206158 |
tttcacagcttcaagagatgggattctttgacacacaagaaaacgtaaaagctcttatttccacttcaggggatgttcatgccgcaattcaacgtctttt |
7206059 |
T |
|
| Q |
242 |
gaggaactccaatcagtagcagataatgtggaaaattcccttcatgatgctttctccggtcaagtcacacatgcatg-ttcctttctattttattagttg |
340 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| || |||| ||||||||||||||||| |
|
|
| T |
7206058 |
tcggaactctaatcagtagcagataatgtgcaaaattcatttcatgatgctctctccggtcaagttacacatgcttgtttcccttctattttattagttg |
7205959 |
T |
|
| Q |
341 |
taatgaatattttgcagtcaattttattttattgcttatttggtttgagacttgggtggagctgtatattacacttcacatgtatttctttatggattca |
440 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7205958 |
taatgaatattttgttatcaatt------------ttatttgttttgagacttgggtggagctgtatattacacttcacatgtatttgtttatggattct |
7205871 |
T |
|
| Q |
441 |
atagttatgtcgaggtattcatgcagattctc |
472 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |
|
|
| T |
7205870 |
atagttatgtcgaggtattcaagtagattctc |
7205839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 9494706 - 9494804
Alignment:
| Q |
125 |
attgtatgccacccagctttcacagcttcaagagatgggattctttgacacacaagaaaacataagagctcttattgccacttcaggggatgttcatgc |
223 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| || |||||| |||||||||| |
|
|
| T |
9494706 |
attgtatgctacccagcttacccagcttcaagagatgggattctttgacacacaagagaacttaagggctcttattgctacatcagggaatgttcatgc |
9494804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University