View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_high_6 (Length: 478)

Name: NF11273_high_6
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_high_6
NF11273_high_6
[»] chr2 (14 HSPs)
chr2 (1-463)||(39131545-39132007)
chr2 (296-463)||(39492692-39492859)
chr2 (3-296)||(39125827-39126106)
chr2 (323-463)||(39469350-39469490)
chr2 (301-442)||(39125577-39125724)
chr2 (10-296)||(39470516-39470801)
chr2 (385-447)||(39395954-39396016)
chr2 (2-61)||(39503680-39503739)
chr2 (366-447)||(39180008-39180089)
chr2 (343-463)||(39145412-39145532)
chr2 (371-447)||(39372498-39372574)
chr2 (332-463)||(39424947-39425079)
chr2 (385-447)||(39386040-39386102)
chr2 (407-447)||(39225015-39225055)
[»] chr5 (1 HSPs)
chr5 (331-452)||(38599532-38599661)
[»] chr6 (1 HSPs)
chr6 (386-458)||(16115538-16115610)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 39132007 - 39131545
Alignment:
Q  1 aaaagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39132007 aaaagtctatttcattttccaagtattagccaaaatttcaattttctccgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaagc 39131908  T
Q  101 taattacataaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131907 taattacataaactttgcgaacaaaactgtggcaatgtactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 39131808  T
Q  201 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39131807 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagta 39131708  T
Q  301 aaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131707 aaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaaca 39131608  T
Q  401 gctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131607 gctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 39131545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 296 - 463
Target Start/End: Original strand, 39492692 - 39492859
Alignment:
Q  296 cagttaaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgta 395  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39492692 cagtaaaaacactctttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcactgta 39492791  T
Q  396 gaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  39492792 gaacagctttgagactagcaacttcttgatctctggccttgtcctgagttcatattcaaattatttat 39492859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 39126106 - 39125827
Alignment:
Q  3 aagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttc--tgcatcaagcgtatgaaac 100  Q
    |||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||| |  ||||||||||             
T  39126106 aagtttatttcattttccaagcattggccaagatttcaattttctcttaacaaatgagagataactcttggacaactacactgcatcaagc--------- 39126016  T
Q  101 taattacataaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 200  Q
    |||||||||||| ||||| ||||||| ||||||| || |||||||| | ||| |||| |||||||||| ||| |||||||||| ||||||||||||||||    
T  39126015 taattacataaaatttgcaaacaaaagtgtggca-tgtactctaaatagctaatttgtatatgaaaacatttatgcatatcaagtttaagcctttgagaa 39125917  T
Q  201 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttc 296  Q
    ||||||||  |||||||||||||||     |||||||||| ||| | ||||||||| |||||||||||||||||| || ||| |||| ||||||||    
T  39125916 attaaaaacaaacaatatacaatag-----aaagaaagaacagtaagccaaagataaagatgaccctgttaattgatcttgaatttt-attctttc 39125827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 323 - 463
Target Start/End: Complemental strand, 39469490 - 39469350
Alignment:
Q  323 agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttctt 422  Q
    ||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  39469490 agctcaataatacgatcgtcaatcttgttaagtagatcctgggattctaggttgttatctacaatgcattgtagaacagcaatgagactagcaacttctt 39469391  T
Q  423 gatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    ||||| | ||||| |||||||||||||||||||||| ||||    
T  39469390 gatctttagccttttcctgagttcacattcaaagtacttat 39469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 301 - 442
Target Start/End: Complemental strand, 39125724 - 39125577
Alignment:
Q  301 aaaacactatttgcctctctgt------agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgt 394  Q
    ||||||||||||||||||||||      ||||||||||||| |  || |||||||||||||| ||||||||||| |||||||||||||||| |||||||     
T  39125724 aaaacactatttgcctctctgtcttttcagctcaagaatacaagcgtaaatcttgttaagtaaatccttgaattttaggttgttatctatattgcattgg 39125625  T
Q  395 agaacagctatgagacaagcaacttcttgatctctggccttgtcctga 442  Q
    | |||||||| ||||| ||||||||| ||| |||||||||||||||||    
T  39125624 ataacagctacgagactagcaacttcctgacctctggccttgtcctga 39125577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 39470516 - 39470801
Alignment:
Q  10 tttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtat-gaaactaattaca 108  Q
    |||||||||||||| ||||  ||| ||||||| |||||| |||||||||||||| |  |||||  |||||| ||||||||| |||| ||| |||||||||    
T  39470516 tttcattttccaagcattaatcaagatttcaactttctcggaacaaatgagagaaa--tcttgaggaacttttgcatcaagtgtattgaagctaattaca 39470613  T
Q  109 taaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgttt-ctgcatatcaaatttaagcctttgagaaattaaaa 207  Q
     |||| ||| ||||||||  |||||| || |||| ||| ||||||||||  ||||||||| ||| || |  |||||| ||||||||||||||||||||||    
T  39470614 aaaacattgtgaacaaaagcgtggca-tgtactccaaataactagtttgt-tatgaaaacattttctacgcatcaaacttaagcctttgagaaattaaaa 39470711  T
Q  208 atgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaa--ttgctcatgagttttcattctttc 296  Q
    |||||| ||   ||  ||  | || ||||||||||  || ||||| |||||||||||||||||||   |  ||||||||||||||||||||    
T  39470712 atgaactattatcatgagtta-gatagaaagaatacagaaccaaaaatagagatgaccctgttaactattatcatgagttttcattctttc 39470801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 39395954 - 39396016
Alignment:
Q  385 aatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    ||||||||||||||||| |   |||||||||| |||||||||||||||||| |||||||||||    
T  39395954 aatgcattgtagaacagttcccagacaagcaatttcttgatctctggccttatcctgagttca 39396016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 39503680 - 39503739
Alignment:
Q  2 aaagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgaga 61  Q
    |||||||||||||||||||||| ||||||||| ||  ||| ||||||| |||||||||||    
T  39503680 aaagtctatttcattttccaagcattagccaagataccaaatttctcttaacaaatgaga 39503739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 39180089 - 39180008
Alignment:
Q  366 attctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||| |||||||| |||  |||||||||||||||||     |||| ||||| |||||||||||||||||| |||||||||||    
T  39180089 attcaaggttgttgtctgaaatgcattgtagaacagtcccaagactagcaatttcttgatctctggccttatcctgagttca 39180008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 463
Target Start/End: Complemental strand, 39145532 - 39145412
Alignment:
Q  343 aatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctga 442  Q
    ||||||||||||| ||| ||   ||||||| ||||||||    || |||||||||||||||  ||||| |||||  |||||||||| ||| || |||||     
T  39145532 aatcttgttaagttgattctcagattctagcttgttatcacctatacattgtagaacagctccgagactagcaatctcttgatctcaggctttatcctgt 39145433  T
Q  443 gttcacattcaaagtatttat 463  Q
    |||||  ||||||||||||||    
T  39145432 gttcatgttcaaagtatttat 39145412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 39372574 - 39372498
Alignment:
Q  371 aggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    ||||||| ||| | |||||| || ||||||| | | |||| ||||| |||||||||||||||||| |||||||||||    
T  39372574 aggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttca 39372498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 463
Target Start/End: Original strand, 39424947 - 39425079
Alignment:
Q  332 atacgattgtcaatcttgttaagtagatccttga-attctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctg 430  Q
    |||||||  ||||| ||||||||||||||| |   |||||||||||||||||  ||| || ||||  ||||||  ||||| ||||| |||||||||| ||    
T  39424947 atacgatcatcaatgttgttaagtagatccctctgattctaggttgttatctccaatacactgtactacagcttcgagactagcaatttcttgatctatg 39425046  T
Q  431 gccttgtcctgagttcacattcaaagtatttat 463  Q
    || || ||||| || ||  ||||||||||||||    
T  39425047 gctttttcctgtgtacaagttcaaagtatttat 39425079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 39386040 - 39386102
Alignment:
Q  385 aatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||||||||||||||||     |||| ||||| |||||||||||||||||| |||||||||||    
T  39386040 aatgcattgtagaacagtccccagactagcaatttcttgatctctggccttatcctgagttca 39386102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 39225055 - 39225015
Alignment:
Q  407 agacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  39225055 agactagcaatttcttgatctctggccttatcctgagttca 39225015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 452
Target Start/End: Complemental strand, 38599661 - 38599532
Alignment:
Q  331 aatacgattgtcaatcttgttaagtagatccttgaattctaggttgtta--------tctataatgcattgtagaacagctatgagacaagcaacttctt 422  Q
    |||| ||| ||||||||||||||||||||||| | ||||||||||||||        |||||||||||  |||||||| ||||||||| |||||||| ||    
T  38599661 aatatgatcgtcaatcttgttaagtagatcctgggattctaggttgttaacttgatatctataatgcaccgtagaacaactatgagactagcaacttttt 38599562  T
Q  423 gatctctggccttgtcctgagttcacattc 452  Q
    ||| |||||||||||| |||||||| ||||    
T  38599561 gatgtctggccttgtcatgagttcatattc 38599532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 16115610 - 16115538
Alignment:
Q  386 atgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagta 458  Q
    |||||||||||||||| |   |||| ||| | |||||||||||| ||||| |||||||||||  |||||||||    
T  16115610 atgcattgtagaacagttcccagactagcgatttcttgatctctagccttatcctgagttcaagttcaaagta 16115538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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