View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_high_8 (Length: 397)

Name: NF11273_high_8
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_high_8
NF11273_high_8
[»] chr3 (22 HSPs)
chr3 (198-352)||(39299912-39300066)
chr3 (20-133)||(39299790-39299903)
chr3 (21-167)||(51336177-51336319)
chr3 (40-166)||(10839399-10839522)
chr3 (40-151)||(19649406-19649515)
chr3 (38-167)||(48206838-48206963)
chr3 (10-166)||(1781718-1781871)
chr3 (334-379)||(39301448-39301493)
chr3 (20-149)||(33103710-33103835)
chr3 (98-151)||(3178744-3178797)
chr3 (20-166)||(6280378-6280520)
chr3 (10-165)||(8926723-8926874)
chr3 (36-167)||(19644345-19644474)
chr3 (21-166)||(43347355-43347495)
chr3 (36-151)||(5391441-5391551)
chr3 (109-151)||(13856151-13856193)
chr3 (40-151)||(54546891-54546998)
chr3 (108-161)||(39352245-39352298)
chr3 (109-151)||(8950538-8950580)
chr3 (109-166)||(22845381-22845438)
chr3 (35-149)||(36539613-36539724)
chr3 (103-151)||(47889772-47889820)
[»] chr6 (5 HSPs)
chr6 (21-166)||(28750669-28750811)
chr6 (109-166)||(27863751-27863808)
chr6 (77-167)||(13103136-13103223)
chr6 (20-166)||(34103653-34103794)
chr6 (109-151)||(14309832-14309874)
[»] chr2 (9 HSPs)
chr2 (40-166)||(41674725-41674849)
chr2 (49-149)||(23685406-23685503)
chr2 (36-151)||(33009654-33009767)
chr2 (20-166)||(28321722-28321865)
chr2 (39-166)||(14539723-14539847)
chr2 (36-151)||(6318492-6318605)
chr2 (109-151)||(29846494-29846536)
chr2 (79-149)||(25665249-25665316)
chr2 (109-149)||(40277324-40277364)
[»] chr4 (13 HSPs)
chr4 (20-163)||(50328762-50328902)
chr4 (49-167)||(35322722-35322837)
chr4 (35-150)||(322584-322696)
chr4 (40-151)||(11054439-11054550)
chr4 (40-166)||(12792250-12792373)
chr4 (103-149)||(5780790-5780836)
chr4 (109-166)||(47084064-47084121)
chr4 (49-166)||(17888569-17888683)
chr4 (109-151)||(16338247-16338289)
chr4 (109-151)||(52632570-52632612)
chr4 (109-166)||(9742552-9742609)
chr4 (121-166)||(10094412-10094457)
chr4 (68-166)||(19124757-19124852)
[»] chr5 (11 HSPs)
chr5 (20-166)||(42119588-42119731)
chr5 (20-166)||(11856261-11856404)
chr5 (37-166)||(36769093-36769218)
chr5 (103-166)||(29790238-29790301)
chr5 (103-166)||(15475413-15475476)
chr5 (109-151)||(9738017-9738059)
chr5 (109-151)||(33271304-33271346)
chr5 (49-149)||(25560363-25560460)
chr5 (109-166)||(614411-614468)
chr5 (36-151)||(8456997-8457109)
chr5 (40-166)||(29491433-29491554)
[»] chr1 (16 HSPs)
chr1 (77-167)||(30745367-30745454)
chr1 (77-167)||(30766818-30766905)
chr1 (20-167)||(44462496-44462641)
chr1 (45-166)||(26835329-26835447)
chr1 (36-101)||(44107469-44107534)
chr1 (114-166)||(37189697-37189749)
chr1 (20-150)||(5558276-5558402)
chr1 (109-151)||(23908337-23908379)
chr1 (35-166)||(10907667-10907794)
chr1 (109-166)||(13131948-13132005)
chr1 (38-101)||(45968652-45968715)
chr1 (109-151)||(3346838-3346880)
chr1 (109-151)||(10156050-10156092)
chr1 (108-166)||(42456623-42456681)
chr1 (40-100)||(1106762-1106822)
chr1 (52-166)||(38859849-38859960)
[»] chr8 (6 HSPs)
chr8 (20-167)||(10112013-10112157)
chr8 (21-143)||(34697431-34697550)
chr8 (20-85)||(16591440-16591505)
chr8 (111-166)||(16591394-16591449)
chr8 (109-151)||(21525410-21525452)
chr8 (109-151)||(42072480-42072522)
[»] chr7 (9 HSPs)
chr7 (21-166)||(17303133-17303276)
chr7 (20-166)||(10334144-10334287)
chr7 (36-151)||(19334594-19334706)
chr7 (109-166)||(15017825-15017882)
chr7 (40-151)||(33057691-33057798)
chr7 (109-151)||(29555973-29556015)
chr7 (109-151)||(29981147-29981189)
chr7 (109-151)||(32876564-32876606)
chr7 (109-163)||(44164765-44164819)
[»] scaffold0086 (1 HSPs)
scaffold0086 (109-166)||(20850-20907)
[»] scaffold0045 (1 HSPs)
scaffold0045 (21-166)||(34471-34612)
[»] scaffold0079 (1 HSPs)
scaffold0079 (109-151)||(54571-54613)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 39299912 - 39300066
Alignment:
Q  198 agctcgtcgggccttggatccaccactgcatgtgaggtccatttcggcgagtaccggtgtttttgcagttcggtgttttttaggttagatttcgttcact 297  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  39299912 agctcgtcgggccttgaatctgccactgcatgtgaagtccatttcggcgagtaccagtgtttttgcagttcggtgttttttagatcagatttcgttcact 39300011  T
Q  298 tccacttgcaatttctttcttatttctacttggttttgttcctattcaacatttt 352  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  39300012 tccccttgcgatttctttcttatttctacttggttttgttcctattcaacgtttt 39300066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 39299790 - 39299903
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  39299790 gattattataaaacatggacaaaacaaatttgcaacatatttatcagggtttacatgagaaattgcacgtaaacaattaaaataaaaattaaagaaattg 39299889  T
Q  120 tccaatttataaag 133  Q
    ||||||||||||||    
T  39299890 tccaatttataaag 39299903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 51336177 - 51336319
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||  ||||||||| |||||| |||||||||||| || | ||||  | |||||||||||||||| ||| ||||    | ||||||||||||    
T  51336177 attattataaaatttgggcaaaaaaaatttacaacacatttat-agaagtttacgtaagaaattgcaagtaaataataaaaa----atttaaagaaattg 51336271  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    || ||||||||||||||||||||| ||||||||   ||||||||||||    
T  51336272 tcaaatttataaagatttatataaaaaattcaggagaatttacataaa 51336319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 10839522 - 10839399
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||||||||||||||| |||  |  |||| || |||||||||||| ||| ||||||||   ||  ||||||||||| |||||||||| || |||||    
T  10839522 aaaaaaaatttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgcccaatttatagaggtttat 10839426  T
Q  140 ataagaaattcagataaatttacataa 166  Q
    |||||||||||||| ||||||||||||    
T  10839425 ataagaaattcagagaaatttacataa 10839399  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 19649515 - 19649406
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||| |||||||||||||||  ||| ||| || |||||||||||| ||| |||| |||  |||  ||||||||||||||||||||||| | |||||    
T  19649515 aaaaaaaaattgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaa--aaatctaaagaaattgtccaatttataagggtttat 19649418  T
Q  140 ataagaaattca 151  Q
    ||||||||||||    
T  19649417 ataagaaattca 19649406  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 48206838 - 48206963
Alignment:
Q  38 gcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattt 137  Q
    |||||| ||||||||||||||||||| ||  |||| || |||||||||||||||| ||||||   ||||  |||| |||||||| ||||||||  | |||    
T  48206838 gcaaaagaaatttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaa---aaaatctaaaaaaattgtcaaatttataggggttt 48206934  T
Q  138 atataagaaattcagataaatttacataaa 167  Q
    ||||||| ||||||||  ||||||||||||    
T  48206935 atataag-aattcagaggaatttacataaa 48206963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 1781718 - 1781871
Alignment:
Q  10 gcagagacacgattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaatt 109  Q
    |||||| || ||||||||||||   ||||||||| ||| |||||||||||||||  || |||| ||  ||||||||||| ||| ||||||   ||||  |    
T  1781718 gcagagccatgattattataaagtctgggcaaaaaaaaattgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaa---aaaatct 1781814  T
Q  110 aaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    |||||||||| |||||||||   | |||||||||||||||||||   ||||||||||    
T  1781815 aaagaaattgcccaatttattggggtttatataagaaattcagagggatttacataa 1781871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 39301448 - 39301493
Alignment:
Q  334 tgttcctattcaacattttttgctctatatgttgctaactcagaag 379  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  39301448 tgttcctattcagcattttttgctctatatgttgctaactcagaag 39301493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 33103710 - 33103835
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||   |||| |||| ||||||||||||||||||| |||||||| || ||||||| |||| ||| |||    | |||| ||||| |||||     
T  33103710 gattattataaagtttgggtaaaaaaaatttgcaacacatttataaggatttacataagaaattacaagcaaataat----aaaaaatttaaataaatta 33103805  T
Q  120 tccaatttataaagatttatataagaaatt 149  Q
    |||||||||||  || ||||||||||||||    
T  33103806 tccaatttatagggacttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 3178744 - 3178797
Alignment:
Q  98 aaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    |||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  3178744 aaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattca 3178797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 6280520 - 6280378
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||   ||| ||||| ||||||||||||||||||| | | |||| || | |||| ||||| |||  |||||||    |  |||| ||||||    
T  6280520 gattattataaagtctggacaaaaaaaatttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa----atctaaataaattg 6280425  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    || |||||||| || ||||||||||||||||||  ||||||||||||    
T  6280424 tcaaatttatagaggtttatataagaaattcagggaaatttacataa 6280378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 165
Target Start/End: Original strand, 8926723 - 8926874
Alignment:
Q  10 gcagagacacgattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaatt 109  Q
    |||||| || |||||||||||| | |||| |||| |||| |||||||||||||| ||| || | || |||||||||||| ||| ||||||||   ||  |    
T  8926723 gcagagtcaagattattataaagcttgggaaaaa-aaatctgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaa---aatct 8926818  T
Q  110 aaagaaattgtccaatttataaagatttatataagaaattcagataaatttacata 165  Q
    | |||||||| | ||||||||  | ||||||| |||||||||||  ||||||||||    
T  8926819 acagaaattgccaaatttataggggtttatatcagaaattcagaggaatttacata 8926874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 19644474 - 19644345
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 135  Q
    |||||||| ||||| | |||||||||||  ||| ||| || |||||||||||  ||| |||| ||| |||  | ||| ||||||| ||||||||||||||    
T  19644474 gggcaaaaaaaatt-gtaacacatttatagggaattacataagaaattgcaatcaaataatccaaa-aaatctaaaaaaaattgttcaatttataaagat 19644377  T
Q  136 ttatataagaaattcagataaatttacataaa 167  Q
    |||||||| ||||||| |  ||||||||||||    
T  19644376 ttatataaaaaattcatagcaatttacataaa 19644345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 43347495 - 43347355
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgt 120  Q
    |||||||||||   ||||||||| ||||| |||||| | |||| ||| |||| || |||||||||||| ||| ||||||||   ||  |||||||||||     
T  43347495 attattataaagtttgggcaaaaaaaatt-gcaacataattat-agggtttacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgc 43347401  T
Q  121 ccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||| ||  | |||||||||||||||||||  |||||||||||    
T  43347400 ccaatttgtaggggtttatataagaaattcagaggaatttacataa 43347355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 5391441 - 5391551
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 135  Q
    |||||||| ||||||||||||||||||| |||   || || |||||||||||| ||| ||| ||||    |  ||||||||||||||||||||||  | |    
T  5391441 gggcaaaaaaaatttgcaacacatttat-agggcgtacataagaaattgcaagcaaataataaaaa----atgtaaagaaattgtccaatttataggggt 5391535  T
Q  136 ttatataagaaattca 151  Q
    ||||||||||||||||    
T  5391536 ttatataagaaattca 5391551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 13856151 - 13856193
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  13856151 taaagaaattgtccaatttatagggatttatataagaaattca 13856193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 54546891 - 54546998
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||| ||| |||||||||||  ||||||| || |||||||| ||| ||| ||||||||    |  ||||||||||||||||||||||  | |||||    
T  54546891 aaaaaaaaattgtaacacatttatagggatttacataagaaattgtaagcaaataatcaaaa----atctaaagaaattgtccaatttataggggtttat 54546986  T
Q  140 ataagaaattca 151  Q
    ||||||||||||    
T  54546987 ataagaaattca 54546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 39352245 - 39352298
Alignment:
Q  108 ttaaagaaattgtccaatttataaagatttatataagaaattcagataaattta 161  Q
    |||||||||||||  |||||||| |||||||||||||||||| ||| |||||||    
T  39352245 ttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta 39352298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 8950580 - 8950538
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  8950580 taaagaaattgcccaatttatagggatttatataagaaattca 8950538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 22845438 - 22845381
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||||| ||||||||  | ||||||||||||||| || | |||||||||||    
T  22845438 taaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataa 22845381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 36539613 - 36539724
Alignment:
Q  35 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 134  Q
    ||||| ||| ||| |||||||||||||||  || |||| ||  ||||||||||  ||| ||||||||   || |||||||||||| ||||||||||  |     
T  36539613 tgggcgaaaaaaaattgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaa---aatttaaagaaattgcccaatttatagggg 36539709  T
Q  135 tttatataagaaatt 149  Q
     ||||||||||||||    
T  36539710 attatataagaaatt 36539724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 47889772 - 47889820
Alignment:
Q  103 aaaaattaaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    |||| |||||||||||| ||||||||||   ||||||||||||||||||    
T  47889772 aaaatttaaagaaattgcccaatttataggaatttatataagaaattca 47889820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 28750811 - 28750669
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgt 120  Q
    ||||||||||| |||||| |||| ||| ||||||||||||||| ||  |||| || ||||||| |||| ||| ||||||||   |||||||||||||||     
T  28750811 attattataaagcatgggtaaaaaaaaattgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaa---aaattaaagaaattgc 28750715  T
Q  121 ccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||  | |||||||||||||||||||  |||||||||||    
T  28750714 ccaatttataggggtttatataagaaattcagaagaatttacataa 28750669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 27863751 - 27863808
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  27863751 taaagaaattgtccaatttataagggtttatataagaaattcagagaaatttacataa 27863808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 13103223 - 13103136
Alignment:
Q  77 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    |||||||||||| ||| ||||||||   ||  ||||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||    
T  13103223 agaaattgcaagcaaataatcaaaa---aatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaatttacataaa 13103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 34103653 - 34103794
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    |||||||||||| | | ||||||||||||| ||||||||||||  | | |||| || |||||||||||  ||| ||| ||||    |  ||||||||||     
T  34103653 gattattataaagcctaggcaaaataaatt-gcaacacatttacaaaggtttacataagaaattgcaaacaaataataaaaa----atctaaagaaattt 34103747  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
     ||||||||||  | |||||||||||||||||||  |||||||||||    
T  34103748 cccaatttatacgggtttatataagaaattcagaggaatttacataa 34103794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 14309874 - 14309832
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  14309874 taaagaaattgcccaatttatagggatttatataagaaattca 14309832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 41674849 - 41674725
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||||| ||| | | ||||  |||  ||||||||||||||||||||||| | |||||    
T  41674849 aaaaaaaatttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaa--aaatctaaagaaattgtccaatttataagggtttat 41674752  T
Q  140 ataagaaattcagataaatttacataa 166  Q
    |||| ||||||||| | ||||||||||    
T  41674751 ataaaaaattcagagagatttacataa 41674725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  49 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 148  Q
    |||||||| |||||| ||| |||| || |||||||||||| ||| |||||||||| |   |||| |||||||| ||||||||| ||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatata---taaataaattgtcaaatttataaggatttatataagaaat 23685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 33009654 - 33009767
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaat-taaagaaattgtccaatttataaaga 134  Q
    |||||||| || |||||||||| |||||  || |||| || | |||||||||| ||| |||   ||||||||| ||||||||||||||||||||||| ||    
T  33009654 gggcaaaaaaattttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataat---aataaaaatctaaagaaattgtccaatttataagga 33009750  T
Q  135 tttatataagaaattca 151  Q
    ||||||||| |||||||    
T  33009751 tttatataacaaattca 33009767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 28321865 - 28321722
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||   ||||||||  ||| |||||||||||||||  || ||||||| |||||||| ||| ||| ||||||   |||| | || |||||||    
T  28321865 gattattataaagtctgggcaaataaaaattgcaacacatttataggggtttatataagaaattggaagcaaataatcaa---aaaattcaatgaaattg 28321769  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
     ||||||||||| | ||||||||||| ||||||   |||||||||||    
T  28321768 cccaatttataagggtttatataagatattcaggagaatttacataa 28321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 14539847 - 14539723
Alignment:
Q  39 caaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattta 138  Q
    ||||| |||||||||||||||||||  |  ||||||| |||||||||||| ||| |||   || ||||  ||||||||||| | ||||||||   |||||    
T  14539847 caaaaaaaatttgcaacacatttataggtgtttatataagaaattgcaagaaaataat---aaaaaaatctaaagaaattgcctaatttataggaattta 14539751  T
Q  139 tataagaaattcagataaatttacataa 166  Q
    |||||||||||||||  || ||||||||    
T  14539750 tataagaaattcagaggaaattacataa 14539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 6318605 - 6318492
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 135  Q
    |||||||| ||| |||||||||||||||  ||  ||| ||  ||||||||||| ||| ||| ||||  |||  ||||||||||| ||||||||||  |||    
T  6318605 gggcaaaaaaaaattgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaa--aaatctaaagaaattgcccaatttatagggat 6318508  T
Q  136 ttatataagaaattca 151  Q
    ||||||||||||||||    
T  6318507 ttatataagaaattca 6318492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 29846494 - 29846536
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  29846494 taaagaaattgtccaatttataggggtttatataagaaattca 29846536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 25665249 - 25665316
Alignment:
Q  79 aaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaatt 149  Q
    |||||||||| ||| ||||||||   || |||||||||||  ||||||||||||  |||||||||||||||    
T  25665249 aaattgcaagcaaataatcaaaa---aacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 40277364 - 40277324
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaatt 149  Q
    ||||||||||| ||||||||||  |||||||||||||||||    
T  40277364 taaagaaattgcccaatttatagggatttatataagaaatt 40277324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 50328762 - 50328902
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||   ||||||||| | ||||||||||||||||| ||| |||| || | ||||||||||| || ||| ||||   || ||||||||||||    
T  50328762 gattattataaagtttgggcaaaaaatatttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaa---aatttaaagaaattg 50328858  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttaca 163  Q
    ||||||||||| || ||||||||||||||| |||  ||||||||    
T  50328859 tccaatttatagaggtttatataagaaattaagaggaatttaca 50328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 35322837 - 35322722
Alignment:
Q  49 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 148  Q
    ||||||||| |||||  || ||||||| |||||||||||| ||| ||||||||   ||  |||||||||||| ||||||||| || ||||||||||| ||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgttcaatttatagaggtttatataagagat 35322741  T
Q  149 tcagataaatttacataaa 167  Q
    ||||| ||||||| |||||    
T  35322740 tcagagaaatttatataaa 35322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 322696 - 322584
Alignment:
Q  35 tgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaag 133  Q
    ||||||||| ||| |||||||||||||| ||||  |||| || |||||||||||| ||| ||||||||   || |||||||||||||||||||||||  |    
T  322696 tgggcaaaaaaaaattgcaacacattta-caggtgtttacataagaaattgcaagcaaataatcaaaa---aatttaaagaaattgtccaatttataggg 322601  T
Q  134 atttatataagaaattc 150  Q
     ||||||||||||||||    
T  322600 gtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 11054439 - 11054550
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||| ||||||||||||||| | | |||| || |||||||||||| ||| ||  |||| ||| | |||||| |||| |||||||||| || |||||    
T  11054439 aaaaaaaagttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttat 11054538  T
Q  140 ataagaaattca 151  Q
    ||||||||||||    
T  11054539 ataagaaattca 11054550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 12792373 - 12792250
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaat-taaagaaattgtccaatttataaagattta 138  Q
    |||| |||||||||||||||||||     ||||||| ||||||| |||| ||| ||||    ||||||| ||||| ||||| ||||||||||  | ||||    
T  12792373 aaaaaaaatttgcaacacatttatagatgtttatataagaaatttcaagcaaataatc----taaaaatctaaagtaattgcccaatttataggggttta 12792278  T
Q  139 tataagaaattcagataaatttacataa 166  Q
    ||||||||||||||| ||||||||||||    
T  12792277 tataagaaattcagagaaatttacataa 12792250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 5780836 - 5780790
Alignment:
Q  103 aaaaattaaagaaattgtccaatttataaagatttatataagaaatt 149  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||    
T  5780836 aaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 47084064 - 47084121
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||  ||||||||||  | ||||||||||||||||||| ||||||||||||    
T  47084064 taaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataa 47084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 17888683 - 17888569
Alignment:
Q  49 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 148  Q
    |||||||||||||||  || |||| || |||||||||||| ||| ||| ||||   ||  ||||||||||| ||||||||||  |  |||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgcccaatttatagggggttatataagaaat 17888587  T
Q  149 tcagataaatttacataa 166  Q
    ||| |  |||||||||||    
T  17888586 tcataggaatttacataa 17888569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 16338289 - 16338247
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  16338289 taaagaaattgtccaatttatagggatttatataaaaaattca 16338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 52632570 - 52632612
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaaattca 52632612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 9742609 - 9742552
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||| ||||||||||  | || ||||||||||||||||  |||||||||||    
T  9742609 taaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacataa 9742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 10094457 - 10094412
Alignment:
Q  121 ccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||    
T  10094457 ccaatttataggggtttatataagaaattcagagaaatttacataa 10094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 19124852 - 19124757
Alignment:
Q  68 atttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||| || |||||||| ||||||| ||| ||||   || ||||||||||||  ||||||| | |  |||||||||||||||||||  |||||||||||    
T  19124852 atttacataagaaattgtaagtaaataataaaaa---aatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataa 19124757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 42119588 - 42119731
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    |||||||||||| ||||| ||||| ||| |||||||||||||||  || |||| || ||||||| |||  ||| ||| ||||   ||  |||||||||||    
T  42119588 gattattataaagcatggacaaaagaaaattgcaacacatttataggggtttacataagaaattacaaacaaataataaaaa---aatctaaagaaattg 42119684  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||| || |||||||||||||||||||  |||||||||||    
T  42119685 tccaatttatagaggtttatataagaaattcagaggaatttacataa 42119731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 11856261 - 11856404
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaatt 118  Q
    |||||||||||| | ||||||||| | | |||||||| |||||| |||| |||| || |||||||||||||||| ||||||||   ||  ||||||||||    
T  11856261 gattattataaagcctgggcaaaaaataattgcaacatatttat-aggagtttacataagaaattgcaagtaaataatcaaaa---aatctaaagaaatt 11856356  T
Q  119 gtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    | ||||||||||  |||||||||||||||||||||   ||||||||||    
T  11856357 gcccaatttatagtgatttatataagaaattcagagcgatttacataa 11856404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 36769218 - 36769093
Alignment:
Q  37 ggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatt 136  Q
    ||||||| |||||||||||||||||||  || |||| ||  ||||||||||| ||| ||||||||    |  ||||||||||| | |||| ||| || ||    
T  36769218 ggcaaaaaaaatttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaa----atctaaagaaattgcctaattcatagaggtt 36769123  T
Q  137 tatataagaaattcagataaatttacataa 166  Q
    |||||||||||||||||  |||||||||||    
T  36769122 tatataagaaattcagaggaatttacataa 36769093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 29790301 - 29790238
Alignment:
Q  103 aaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||| |  |||||||||||    
T  29790301 aaaaactaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataa 29790238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 15475476 - 15475413
Alignment:
Q  103 aaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    |||| ||||||||||| | ||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  15475476 aaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataa 15475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 9738059 - 9738017
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  9738059 taaagaaattgtccaatttatagggatttatataagaaattca 9738017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 33271346 - 33271304
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  33271346 taaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 25560460 - 25560363
Alignment:
Q  49 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 148  Q
    |||||||||||||||  || |||| || |||||||||||| ||| ||| |||||||    |||||||||||||||||||||| |  ||||||||||||||    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataat-aaaataatc--taaagaaattgtccaatttatagatgtttatataagaaat 25560364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 614468 - 614411
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||| | ||||||||  ||||||||||| |||||||||  |||||||||||    
T  614468 taaagaaattgccaaatttatagggatttatataaaaaattcagaggaatttacataa 614411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 8457109 - 8456997
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 135  Q
    |||||||| ||| |||||||| ||||||  || |||| || |||||||||||| ||| ||| ||||   ||  ||||||||||| ||||||||||  |      
T  8457109 gggcaaaaaaaaattgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgcccaatttataggggg 8457013  T
Q  136 ttatataagaaattca 151  Q
    ||||||||||||||||    
T  8457012 ttatataagaaattca 8456997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 29491554 - 29491433
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||| |||||||||||||||  |  |||  || |||||||||||| ||| ||||||||   || |||||||| ||||||||||||||  | || ||    
T  29491554 aaaaaaaaattgcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaa---aatttaaagaa-ttgtccaatttataggggtt-at 29491460  T
Q  140 ataagaaattcagataaatttacataa 166  Q
    |||||||||||| | ||||||||||||    
T  29491459 ataagaaattcatagaaatttacataa 29491433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 30745367 - 30745454
Alignment:
Q  77 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    |||||||||||||||| ||||||||   || |||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||    
T  30745367 agaaattgcaagtaaataatcaaaa---aatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaa 30745454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 30766818 - 30766905
Alignment:
Q  77 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    |||||||||||||||| ||||||||   || |||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||    
T  30766818 agaaattgcaagtaaataatcaaaa---aatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaa 30766905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 44462641 - 44462496
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaatta-aagaaatt 118  Q
    |||||||||||||  || |||||| ||  |||||||| |||| |  || ||||||| ||||| |||||||||| |||||||| |||||| | ||||||||    
T  44462641 gattattataaaatctgagcaaaaaaa--ttgcaacatatttttaggggtttatataagaaactgcaagtaaataatcaaaa-aaaaatcagaagaaatt 44462545  T
Q  119 gtccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    ||| |||||||| || ||| ||||||||||||||||| |||||||||||    
T  44462544 gtctaatttatagaggtttgtataagaaattcagatagatttacataaa 44462496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 26835329 - 26835447
Alignment:
Q  45 aaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataag 144  Q
    |||||||||||||||||||  || |||| ||||||||||||||| ||| ||||||   ||||  |||| ||||||| |||||||||    ||||||||||    
T  26835329 aaatttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaa---aaaatctaaaaaaattgttcaatttataggagtttatataag 26835425  T
Q  145 aaattcagataaatttacataa 166  Q
    ||||||| || |||||||||||    
T  26835426 aaattcatatgaatttacataa 26835447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 44107534 - 44107469
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaa 101  Q
    ||||||||  |||||||||||||||||| ||| |||| || |||||||||||||||| ||||||||    
T  44107534 gggcaaaaataatttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaa 44107469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 37189697 - 37189749
Alignment:
Q  114 aaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||||||||| |||||||||||||||||||| | | ||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataa 37189749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 5558276 - 5558402
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaatt 118  Q
    ||||||||||||   ||||||||| ||| || ||||| |||||| |||| |||||||  ||||||||||| ||| ||||||||    |  ||||||||||    
T  5558276 gattattataaagtctgggcaaaaaaaaattacaacatatttat-aggagtttatatatgaaattgcaagcaaataatcaaaa----atctaaagaaatt 5558370  T
Q  119 gtccaatttataaagatttatataagaaattc 150  Q
    ||||||||||||  | ||||||||||||||||    
T  5558371 gtccaatttataggggtttatataagaaattc 5558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 23908337 - 23908379
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  23908337 taaagaaattgtccaatttatagggatttatataagaaattca 23908379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 10907794 - 10907667
Alignment:
Q  35 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 134  Q
    ||||||||| ||||| |||||||||||||  |  | || || |||||||||||| ||| ||||||||   ||  |||||||||||||  |||||||  |     
T  10907794 tgggcaaaaaaaatt-gcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgtctgatttatagggg 10907699  T
Q  135 tttatataagaaattcagataaatttacataa 166  Q
    |||||||||||||||||||  |||||||||||    
T  10907698 tttatataagaaattcagaggaatttacataa 10907667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 13131948 - 13132005
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||||||||||||||  ||||||||||| ||||| |||  |||||||||||    
T  13131948 taaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataa 13132005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 45968652 - 45968715
Alignment:
Q  38 gcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaa 101  Q
    ||||||||||||  ||| |||||||  |||||||| || |||||||||||||||| ||||||||    
T  45968652 gcaaaataaattcacaatacatttaagaggatttacataagaaattgcaagtaaataatcaaaa 45968715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 3346838 - 3346880
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  3346838 taaagaaattgtccaatttataggggtttatataagaaattca 3346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 10156092 - 10156050
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  10156092 taaagaaattgtccaatttatagaagtttatataagaaattca 10156050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 42456623 - 42456681
Alignment:
Q  108 ttaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    |||||||||||| ||||||||||  | ||||||||||||||||| |  |||||||||||    
T  42456623 ttaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataa 42456681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 1106762 - 1106822
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaa 100  Q
    |||| ||||| ||||||||||||| || ||||| || |||||||||||| ||| |||||||    
T  1106762 aaaaaaaattagcaacacatttataagaatttacataagaaattgcaagcaaataatcaaa 1106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 38859849 - 38859960
Alignment:
Q  52 caacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||  || |||| || |||||||||||| ||| ||| ||||   ||  |||| |||||| ||||||||||  | |||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaaaaaattgcccaatttataggggtttatataagaaattca 38859945  T
Q  152 gataaatttacataa 166  Q
     |  |||||||||||    
T  38859946 taggaatttacataa 38859960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 10112013 - 10112157
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    |||||||||||| | |  ||| |||||| |||||||| ||||||  || |||| || ||||||||||| |||| ||||||||   || | ||||||||||    
T  10112013 gattattataaagcctacgcataataaaattgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaa---aattaaaagaaattg 10112109  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataaa 167  Q
    ||||||||||||   ||||||||||||||| |||  ||||||||||||    
T  10112110 tccaatttataagagtttatataagaaattaagaggaatttacataaa 10112157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 34697550 - 34697431
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgt 120  Q
    |||||||||||   ||||||||||||  |||||||| |||||| || ||||| || |||||||||||| ||| |||   || ||||||||||||||||      
T  34697550 attattataaagtttgggcaaaataatattgcaacatatttataagaatttacataagaaattgcaagcaaataat---aaaaaaaattaaagaaatttc 34697454  T
Q  121 ccaatttataaagatttatataa 143  Q
     ||||||||| ||||||||||||    
T  34697453 tcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 16591505 - 16591440
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgc 85  Q
    ||||||||||||  |||||||||| ||| ||||||||||||||| ||| |||| || |||||||||    
T  16591505 gattattataaagtatgggcaaaaaaaaattgcaacacatttataagggtttacataagaaattgc 16591440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 16591449 - 16591394
Alignment:
Q  111 aagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||| ||||||||||  ||||||||||||||||||  | ||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataa 16591394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 21525410 - 21525452
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaaattca 21525452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 42072480 - 42072522
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  42072480 taaagaaattgtccaatttataggggtttatataagaaattca 42072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 17303276 - 17303133
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgt 120  Q
    |||||| |||| | ||||||||| ||| |||||||||||||||   | |||| || |||||||||||| ||| ||| ||||  |||  |||||||||||     
T  17303276 attattgtaaagcctgggcaaaaaaaaattgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaa--aaatctaaagaaattgc 17303179  T
Q  121 ccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    |||||||| || | ||||||||||||||||| |  |||||||||||    
T  17303178 ccaatttacaagggtttatataagaaattcataggaatttacataa 17303133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 10334144 - 10334287
Alignment:
Q  20 gattattataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||   || |||||| ||| |||||||||||||||  || |||| || |||||||||||| ||| | | ||||||     |||||||||||    
T  10334144 gattattataaagtctgagcaaaagaaaattgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatc---taaagaaattg 10334240  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
     |||||||||||   |||||||||||||||||||  |||||||||||    
T  10334241 cccaatttataagagtttatataagaaattcagaggaatttacataa 10334287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 19334706 - 19334594
Alignment:
Q  36 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 135  Q
    |||||||| ||  |||||||| |||||| ||| ||||||| |||||||||||| ||| ||| ||||  |||  ||||||||||||||||||||||  | |    
T  19334706 gggcaaaaaaatattgcaacaaatttat-agggtttatataagaaattgcaagcaaataataaaaa--aaatctaaagaaattgtccaatttataggggt 19334610  T
Q  136 ttatataagaaattca 151  Q
    ||||||||||||||||    
T  19334609 ttatataagaaattca 19334594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 15017825 - 15017882
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||||||||||||||    |||||||||||||||||||  |||||||||||    
T  15017825 taaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataa 15017882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 33057798 - 33057691
Alignment:
Q  40 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 139  Q
    |||| ||| ||||||||||||||| |||||||| || |||||||||||| ||| ||| ||||   ||  |||||||||||| |||||||||  |  ||||    
T  33057798 aaaaaaaaattgcaacacatttat-aggatttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgttcaatttataggggattat 33057703  T
Q  140 ataagaaattca 151  Q
    ||||||||||||    
T  33057702 ataagaaattca 33057691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 29556015 - 29555973
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  29556015 taaagaaattgtccaatttataggggtttatataagaaattca 29555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 29981189 - 29981147
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  29981189 taaagaaattgtccaatttatagaagtttatataagaaattca 29981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 32876606 - 32876564
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattca 32876564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 44164819 - 44164765
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttaca 163  Q
    ||||||||||| ||||||||||  | ||||||||||||||||| | |||||||||    
T  44164819 taaagaaattgcccaatttataggggtttatataagaaattcatagaaatttaca 44164765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 20907 - 20850
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    |||| ||||||||||||||||| || |||||||||||||||||||  |||||||||||    
T  20907 taaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataa 20850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 34612 - 34471
Alignment:
Q  21 attattataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattg 119  Q
    ||||||||||||  ||||||||| |||||  |||||| ||||| |||| |||| || |||||||| ||| ||| ||||||||   ||  |||||||| ||    
T  34612 attattataaaatctgggcaaaaaaaatta-caacacgtttat-aggagtttacataagaaattgtaagcaaataatcaaaa---aatctaaagaaactg 34518  T
Q  120 tccaatttataaagatttatataagaaattcagataaatttacataa 166  Q
    ||||||||||| ||||||||||||  ||||||||   ||||||||||    
T  34517 tccaatttatagagatttatataaagaattcagagggatttacataa 34471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 54571 - 54613
Alignment:
Q  109 taaagaaattgtccaatttataaagatttatataagaaattca 151  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  54571 taaagaaattgtccaatttatagggatttatataaaaaattca 54613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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