View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11273_low_13 (Length: 295)
Name: NF11273_low_13
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 3917400 - 3917137
Alignment:
| Q |
20 |
tatgttggggcctctgcctgggatagattgcatttagtttataaacagacaattttaacaataagctaaaaaatattacttttgttatgcagaatatcaa |
119 |
Q |
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| T |
3917400 |
tatgttggggcctctggctgggatagattgtatttagtttataaacagacaattttaacaataagctaaaaaatattacttttgttatgcagaatatcaa |
3917301 |
T |
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| Q |
120 |
aatatgacaaagtaaacttatacaaaaatatagaatatagagaaaatactctcaaaacaatctgttcaatttccttcaattcagtttggtttttgaccaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||| ||||||| |||| |
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| T |
3917300 |
aatatgacaaagtaaacttatacaaaaatatagaatataaagaaaatactctcaaaacaatctgtccggtttccttcgattcagttcggtttttaaccag |
3917201 |
T |
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| Q |
220 |
aactaaaaatattggataatttttagtttgatttga-ttaatttttcgagttcatccattttct |
282 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
3917200 |
aactaaaaatattggataatttttagttcgatttgatttaatttttcgagttcatcgattttct |
3917137 |
T |
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