View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_low_14 (Length: 276)

Name: NF11273_low_14
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_low_14
NF11273_low_14
[»] chr4 (10 HSPs)
chr4 (68-198)||(45364067-45364198)
chr4 (68-198)||(45375307-45375438)
chr4 (68-198)||(45382886-45383017)
chr4 (68-213)||(45346782-45346927)
chr4 (1-50)||(48900010-48900059)
chr4 (88-214)||(48842767-48842893)
chr4 (68-181)||(48872662-48872775)
chr4 (68-181)||(48877966-48878079)
chr4 (68-150)||(45342308-45342390)
chr4 (68-213)||(48865572-48865716)
[»] chr3 (3 HSPs)
chr3 (70-220)||(11014035-11014186)
chr3 (75-210)||(11023353-11023489)
chr3 (90-174)||(11004561-11004645)
[»] chr8 (1 HSPs)
chr8 (90-214)||(35648299-35648421)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 45364067 - 45364198
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttt-taggtggaaaacacatgaacagttttcata 166  Q
    |||||| |||||||| |||| ||||||||||||||| ||| |||| | ||||||| |||||||||  || ||||| ||||||| |||||||||||| |||    
T  45364067 gctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagtttttata 45364166  T
Q  167 ttatatctccaacaatacccctggaattacag 198  Q
    ||||||||| ||||| | |||||||| |||||    
T  45364167 ttatatctctaacaaaatccctggaactacag 45364198  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 45375307 - 45375438
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttt-taggtggaaaacacatgaacagttttcata 166  Q
    |||||| |||||||| |||| ||||||||||||||| ||| |||| | ||||||| |||||||||  || ||||| ||||||| |||||||||||| |||    
T  45375307 gctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagtttttata 45375406  T
Q  167 ttatatctccaacaatacccctggaattacag 198  Q
    ||||||||| ||||| | |||||||| |||||    
T  45375407 ttatatctctaacaaaatccctggaactacag 45375438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 45382886 - 45383017
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttt-taggtggaaaacacatgaacagttttcata 166  Q
    |||||| |||||||| |||| ||||||||||||||| ||| |||| | ||||||| |||||||||  || ||||| ||||||| |||||||||||| |||    
T  45382886 gctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagtttttata 45382985  T
Q  167 ttatatctccaacaatacccctggaattacag 198  Q
    ||||||||| ||||| | |||||||| |||||    
T  45382986 ttatatctctaacaaaatccctggaactacag 45383017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 45346782 - 45346927
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatat 167  Q
    ||||||||||| ||| || ||||||||| ||||||||||| |||| | ||||||| ||||||||| || |||||||||||||| | ||  ||||| ||||    
T  45346782 gctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatat 45346881  T
Q  168 tatatctccaacaatacccctggaattacagcccttgaagaatgga 213  Q
    |||||||| |  || | |||||||| |||| || ||||||||||||    
T  45346882 tatatctcaacaaaaatccctggaactacaaccattgaagaatgga 45346927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48900059 - 48900010
Alignment:
Q  1 agctatacatgaagccgagcataggagtataatttttatcatttatacaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48900059 agctatacatgaagccgagcataggagtataatttttatcatttatacaa 48900010  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 214
Target Start/End: Original strand, 48842767 - 48842893
Alignment:
Q  88 tcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatattatatctccaacaatacccc 187  Q
    ||||||||||||||| |||| |||| | | |||||   || |||| ||||||  ||||||||||||||||||||| |||||||||||| ||| | |||||    
T  48842767 tcagatgaactttgttgtgaatcatcaatccaaaaaagttaagctattttagacggaaaacacatgaacagtttttatattatatctctaactaaacccc 48842866  T
Q  188 tggaattacagcccttgaagaatggac 214  Q
    |||||  ||| ||||||||| ||||||    
T  48842867 tggaacaacatcccttgaaggatggac 48842893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 48872775 - 48872662
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatat 167  Q
    |||||| |||||||  || |||| |||||||| ||||||| ||||   ||||||| | ||||| | |||||||||||||||||||||| |||||| ||||    
T  48872775 gctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacacatgaaaagtttttatat 48872676  T
Q  168 tatatctccaacaa 181  Q
    |||||||| |||||    
T  48872675 tatatctctaacaa 48872662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 48878079 - 48877966
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatat 167  Q
    |||||| |||||||  || |||| |||||||| ||||||| ||||   ||||||| | ||||| | |||||||||||||||||||||| |||||| ||||    
T  48878079 gctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacacatgaaaagtttttatat 48877980  T
Q  168 tatatctccaacaa 181  Q
    |||||||| |||||    
T  48877979 tatatctctaacaa 48877966  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 45342308 - 45342390
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacac 150  Q
    ||||||||||| ||| || ||||||||| ||||||||||| |||| | ||||||| ||||||||| || ||||||||||||||    
T  45342308 gctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacac 45342390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 48865716 - 48865572
Alignment:
Q  68 gctgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatat 167  Q
    ||||||||| ||||| || || |||||||||||||||||| | ||   ||||||| ||||||||| ||||| |  |||||||||  ||||||||| ||||    
T  48865716 gctgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctattttaaggtgaaaacaca--aacagtttttatat 48865619  T
Q  168 tatatctc-caacaatacccctggaattacagcccttgaagaatgga 213  Q
    |||| |||  ||||| |||||  | |  |||||||||||||||||||    
T  48865618 tatacctcttaacaaaaccccaagtaccacagcccttgaagaatgga 48865572  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 11014035 - 11014186
Alignment:
Q  70 tgtccaagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatatta 169  Q
    ||||||||||||| || ||||||||||||||||   || |||| | ||||||| |||| |||| |||||||||||||| ||||||| |||||| |||| |    
T  11014035 tgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtggaaaatacatgaatagtttttatatca 11014134  T
Q  170 tatctccaacaatacccc-tggaattacagcccttgaagaatggacgataca 220  Q
    |||||  ||||  ||||| || || |||||| |||||||||||||| |||||    
T  11014135 tatctttaacataaccccttgaaactacagctcttgaagaatggactataca 11014186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 210
Target Start/End: Original strand, 11023353 - 11023489
Alignment:
Q  75 aagcaaacccaactcagatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatattatatct 174  Q
    |||||||| || |||||||||||||||| |||| |||| | ||| ||| |||| |||| |||||||||||||  ||||||| |||||| |||| ||||||    
T  11023353 aagcaaactcagctcagatgaactttgttgtgaatcatcaattccaaaagctttagctattttaggtggaaagtacatgaatagtttttatatcatatct 11023452  T
Q  175 ccaaca-atacccctggaattacagcccttgaagaat 210  Q
      |||| |  |||||| || |||||| ||||||||||    
T  11023453 ttaacataaccccctgaaactacagctcttgaagaat 11023489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 11004561 - 11004645
Alignment:
Q  90 agatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatattatatct 174  Q
    ||||||||| ||| |||| |||| | ||||||| |||| |||| |||||||||||||| ||||||| |||||| |||| ||||||    
T  11004561 agatgaactatgttgtgaatcatcaattcaaaaagctttagcttttttaggtggaaaatacatgaatagtttttatatcatatct 11004645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 35648299 - 35648421
Alignment:
Q  90 agatgaactttgtcgtgattcattagttcaaaaggcttgagctgttttaggtggaaaacacatgaacagttttcatattatatctccaacaatacccctg 189  Q
    |||||||||||||||||  |||| | ||||||||  ||  | |||||||| |||||||| ||||||| ||||| |||||||||||| ||| | |||||||    
T  35648299 agatgaactttgtcgtgtatcatcaattcaaaag--ttaggatgttttagatggaaaactcatgaacggtttttatattatatctctaactaaacccctg 35648396  T
Q  190 gaattacagcccttgaagaatggac 214  Q
    |||  ||| ||||||||||||||||    
T  35648397 gaacaacatcccttgaagaatggac 35648421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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