View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11273_low_2 (Length: 646)
Name: NF11273_low_2
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 29 - 641
Target Start/End: Original strand, 38057645 - 38058260
Alignment:
| Q |
29 |
aggattaaaacatgtttcttatagatgacaacatggatgaaacgtatgatcccaaaataattgatgtcgtccactttctttatgccactttagcaacttc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38057645 |
aggattaaaacatgtttcttatagatgacaacatggatgaaacgtatgatcccaaaataattgatgtcgtccactttctttatgccactttagcaacttc |
38057744 |
T |
|
| Q |
129 |
acttcttataaattttgcctgacaagtttactatagttgatttagcacacttca----atatatttccctacactgctactagtacagtacaaactacaa |
224 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
38057745 |
acttcttataaattttgcctgactagtttactatagttgatttagcacacttcagtcaatctatttccctacactcctactagtacagtacaaactacaa |
38057844 |
T |
|
| Q |
225 |
aatcgtttataaatttgcagcatcatatacacaacatcataaacnnnnnnnntgatgcctctaaactcatattttactattctactaattgctctcttat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38057845 |
aatcgtttataaatttgcagcatcatatacacaacatcataaacaaaaaaa-tgatgcctctaaactcatattttactattctactaattgctctcttat |
38057943 |
T |
|
| Q |
325 |
tttcatatacatcttctgcaattgatactagtacacatggagaaaatttccttcaatgtctctatagttattcacataactcaacttcaatctctgaagt |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38057944 |
tttcatatacatcttcttcaattgatactagtacacatgaagaaaatttccttgaatgtctctatagttattcacataactcaacttcaatctctgaagt |
38058043 |
T |
|
| Q |
425 |
tgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacacaacacctaaacctcttgtcatt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38058044 |
tgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacacaacacctaaacctcttttcatt |
38058143 |
T |
|
| Q |
525 |
atcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcgaatccgaagtggtggccatgactttgagg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
38058144 |
atcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcgaatccgaagcggtggccatgattttgagg |
38058243 |
T |
|
| Q |
625 |
gtcggtcctatgcttct |
641 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
38058244 |
gtcggtcctatgtttct |
38058260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 277 - 641
Target Start/End: Complemental strand, 38062558 - 38062194
Alignment:
| Q |
277 |
tgatgcctctaaactcatattttactattctactaattgctctcttattttcatatacatcttctgcaattgatactagtacacatggagaaaatttcct |
376 |
Q |
| |
|
|||| ||||||| |||||||| | |||| ||||||||||| | || ||||||| |||| ||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
38062558 |
tgattcctctaagatcatatttgattattgtactaattgctgttttcttttcattcacatattctgcaattgatactactaaacatgaagaaaatttcct |
38062459 |
T |
|
| Q |
377 |
tcaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaact |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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|
| T |
38062458 |
acaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtacaccaaaaccaattcctcttactcatcaatactccaatttaccact |
38062359 |
T |
|
| Q |
477 |
caaaatctcagatttgcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaa |
576 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
38062358 |
caaaatctcagatttgcatccaaaacaacaccgaaacctcttgtcattatcacacctaaacatatttcccaaattcaaacaaccataatctgttcccaaa |
38062259 |
T |
|
| Q |
577 |
tccacaacctgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
641 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||| ||||| |||||||||||||||| |||| |
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|
| T |
38062258 |
gacatgacctgcagattcgaatccgaagcggcggccacgacttcgagggtcggtcctatgtttct |
38062194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 323 - 627
Target Start/End: Original strand, 38072270 - 38072574
Alignment:
| Q |
323 |
attttcatatacatcttctgcaattgatactagtacacatggagaaaatttccttcaatgtctctatagttattcacataactcaacttcaatctctgaa |
422 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||| | |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
38072270 |
attttcatttacatcttttgcaattgatacaagtcctcatgaagataatttccttcaatgtctctatagttattcacataacataacttcaatctctaaa |
38072369 |
T |
|
| Q |
423 |
gttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagatttgcatccaacacaacacctaaacctcttgtca |
522 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||| |||| |||||| ||||| ||||||| |
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|
| T |
38072370 |
gttgtgtacacaaaaaccaattcctcttactcatcaatactcaaattttcaattcaaaacctcagatttgcaaccaatgaaacaccaaaaccccttgtca |
38072469 |
T |
|
| Q |
523 |
ttatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcagattcgaatccgaagtggtggccatgactttga |
622 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||| ||||||||||||| ||| ||| | |||| |||||||| || ||||||||||| ||||| || |
|
|
| T |
38072470 |
ttatcacacctacacaaatttcccatattcaaacagccataatctgttcccaacaccatggcatgcaaattcgaattcgtagtggtggccacgacttcga |
38072569 |
T |
|
| Q |
623 |
gggtc |
627 |
Q |
| |
|
||||| |
|
|
| T |
38072570 |
gggtc |
38072574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 277 - 625
Target Start/End: Original strand, 38081309 - 38081657
Alignment:
| Q |
277 |
tgatgcctctaaactcatattttactattctactaattgctctcttattttcatatacatcttctgcaattgatactagtacacatggagaaaatttcct |
376 |
Q |
| |
|
|||||||||||| ||||||||| || || ||| |||||| | |||||||||||| ||||||||||||||||||||| ||| ||| ||| || ||||| |
|
|
| T |
38081309 |
tgatgcctctaagctcatatttgtctgttgcacttattgctattttattttcatatgcatcttctgcaattgatactaatacttatgaagataacttcct |
38081408 |
T |
|
| Q |
377 |
tcaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaact |
476 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
38081409 |
tcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtacaccaaaaccaatccctcttactcaccagtactcaaatttacaact |
38081508 |
T |
|
| Q |
477 |
caaaatctcagatttgcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaa |
576 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||| |||||||| ||||||||| | | |||||| ||||||||| ||||||| ||||| |||| |
|
|
| T |
38081509 |
caaaatctaagatttgcatcctacaaaacaccaaaaccacttgtcatcatcacacctctagaaccttcccatattcaaacagccataatttgttcccaaa |
38081608 |
T |
|
| Q |
577 |
tccacaacctgcagattcgaatccgaagtggtggccatgactttgaggg |
625 |
Q |
| |
|
|| ||| |||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
38081609 |
atcatggcctccagattcgaacccgtagtgggggccatgactttgaggg |
38081657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 301 - 636
Target Start/End: Original strand, 38085749 - 38086093
Alignment:
| Q |
301 |
ctattctactaattgctctcttattttcatatacatcttctgcaattgatactagtac----ac--atggagaaaat---ttccttcaatgtctctatag |
391 |
Q |
| |
|
||||| ||||||||||| | |||||||||| ||||||||| ||||||| ||||| ||| || ||| ||| ||| |||||||||||||||||||| |
|
|
| T |
38085749 |
ctattgtactaattgctattttattttcatttacatcttcagcaattggtactactactactactaatgaagataatagcttccttcaatgtctctatag |
38085848 |
T |
|
| Q |
392 |
ttattcacataactcaacttcaatctctgaagttgtgtacaccaaaaccaattcctcttactcatcgatactcaaatttacaactcaaaatctcagattt |
491 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||||||| || ||| |||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
38085849 |
ctattcacataactccacttcaatctctaaagttgtgtacaccaaagccaattcatcatacacatcaatactccaattttcaactcaaaatctcagattt |
38085948 |
T |
|
| Q |
492 |
gcatccaacacaacacctaaacctcttgtcattatcacacctaaacagatttcccaaattcaaacaaccataatctgttcacaaatccacaacctgcaga |
591 |
Q |
| |
|
||| |||||| |||||| ||||| ||||| ||| |||||||| | | |||||||| |||||| ||||| |||| ||||| ||| ||||| |||||||| |
|
|
| T |
38085949 |
gcaaccaacaaaacaccaaaaccacttgtaattgtcacacctctagaaatttcccatattcaagcaaccgtaatttgttcccaataccacagcctgcaga |
38086048 |
T |
|
| Q |
592 |
ttcgaatccgaagtggtggccatgactttgagggtcggtcctatg |
636 |
Q |
| |
|
||||||| || || || || || ||||||||||||| ||| |||| |
|
|
| T |
38086049 |
ttcgaattcgcagcggcggtcacgactttgagggtctgtcttatg |
38086093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 586 - 641
Target Start/End: Original strand, 37953867 - 37953922
Alignment:
| Q |
586 |
tgcagattcgaatccgaagtggtggccatgactttgagggtcggtcctatgcttct |
641 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||| |||||||| |||| |
|
|
| T |
37953867 |
tgcagattcgaatccgaagtggtggccacgactacgaaggtctgtcctatgtttct |
37953922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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