View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11273_low_3 (Length: 576)
Name: NF11273_low_3
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 26498870 - 26498592
Alignment:
| Q |
5 |
agcctacaacttgtatccttagatatatgtaagagaaagcacgatggggattacgcaagtggtttaacaatgggaaacttgactgaatattcatgataga |
104 |
Q |
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| T |
26498870 |
agccaacaacttgtatccataggtatatgtaagaaaaagcacgatggggattatgcaagtggtttaacaatgggaaacttgactgaatattcatgataga |
26498771 |
T |
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| Q |
105 |
aggaatgtatactaatttgttgtcctggtgtttggtttgtagtatgtggtctattcgttttctgatgatttcactagaagaggattcaagatctgaaaca |
204 |
Q |
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| T |
26498770 |
aggaatggatactaatttgttgtcctggtgtttggtttgtagtatgtggtctattcgttttctgatgatttcactagaagaggattcaagatctgaaaca |
26498671 |
T |
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| Q |
205 |
agaattgttatgaaagagtttctaattatttagagttatttttcttccataattgaaaacaaatatttggtaaaaagta |
283 |
Q |
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| T |
26498670 |
agaattgttatgaaagagtttctaattatttagagttatttttctttcataattgaaaacaaatatttggtaaaaagta |
26498592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 276 - 562
Target Start/End: Complemental strand, 26469572 - 26469285
Alignment:
| Q |
276 |
aaaaagtacaagtggaagaataagg-cttcttcatagagtagagctcacaatgaatcaacaaaagggtggtttggtgcattagtccgttccataacatat |
374 |
Q |
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| T |
26469572 |
aaaaagttcaagtggaagaataagggcttgttcctaaagtagagctcaaaatgaatcaacaaaagtgtgatttggtgcattagttcgttccgtaacatat |
26469473 |
T |
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| Q |
375 |
atacaggtcagaatttgttgacactaaatctcgtccattaaattaaaaactgtttgacatgattatagtaaaacacaataaaaggtcacgaatgtcgcca |
474 |
Q |
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| T |
26469472 |
atataggtcataatctgttgatactaaatctcatccattaaattaaaaatagtttaacatgattctagtaaaacacaataaaaggtcatgtatgtcgcca |
26469373 |
T |
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| Q |
475 |
tccctacatcacgttctctttaccggtgaatttggtttatgcaccaaaacatatatgattgaagaaattgcaaaacccaagatcaaat |
562 |
Q |
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| T |
26469372 |
tccctgtatcatgttctctttaccggtgaatttggtttatgcaccaaaacatatctgattgaagaaattgcaaaacccaagatcaaat |
26469285 |
T |
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