View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_low_6 (Length: 478)

Name: NF11273_low_6
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_low_6
NF11273_low_6
[»] chr2 (14 HSPs)
chr2 (1-463)||(39131545-39132007)
chr2 (296-463)||(39492692-39492859)
chr2 (3-296)||(39125827-39126106)
chr2 (323-463)||(39469350-39469490)
chr2 (301-442)||(39125577-39125724)
chr2 (10-296)||(39470516-39470801)
chr2 (385-447)||(39395954-39396016)
chr2 (2-61)||(39503680-39503739)
chr2 (366-447)||(39180008-39180089)
chr2 (343-463)||(39145412-39145532)
chr2 (371-447)||(39372498-39372574)
chr2 (332-463)||(39424947-39425079)
chr2 (385-447)||(39386040-39386102)
chr2 (407-447)||(39225015-39225055)
[»] chr5 (1 HSPs)
chr5 (331-452)||(38599532-38599661)
[»] chr6 (1 HSPs)
chr6 (386-458)||(16115538-16115610)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 39132007 - 39131545
Alignment:
Q  1 aaaagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  39132007 aaaagtctatttcattttccaagtattagccaaaatttcaattttctccgaacaaatgagagataactcttggagaacttctgcatcaagcgtatgaagc 39131908  T
Q  101 taattacataaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 200  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131907 taattacataaactttgcgaacaaaactgtggcaatgtactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 39131808  T
Q  201 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39131807 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagta 39131708  T
Q  301 aaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131707 aaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaaca 39131608  T
Q  401 gctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39131607 gctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 39131545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 296 - 463
Target Start/End: Original strand, 39492692 - 39492859
Alignment:
Q  296 cagttaaaacactatttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgta 395  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39492692 cagtaaaaacactctttgcctctctgtagctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcactgta 39492791  T
Q  396 gaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  39492792 gaacagctttgagactagcaacttcttgatctctggccttgtcctgagttcatattcaaattatttat 39492859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 39126106 - 39125827
Alignment:
Q  3 aagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttc--tgcatcaagcgtatgaaac 100  Q
    |||| |||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||| |  ||||||||||             
T  39126106 aagtttatttcattttccaagcattggccaagatttcaattttctcttaacaaatgagagataactcttggacaactacactgcatcaagc--------- 39126016  T
Q  101 taattacataaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaa 200  Q
    |||||||||||| ||||| ||||||| ||||||| || |||||||| | ||| |||| |||||||||| ||| |||||||||| ||||||||||||||||    
T  39126015 taattacataaaatttgcaaacaaaagtgtggca-tgtactctaaatagctaatttgtatatgaaaacatttatgcatatcaagtttaagcctttgagaa 39125917  T
Q  201 attaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttc 296  Q
    ||||||||  |||||||||||||||     |||||||||| ||| | ||||||||| |||||||||||||||||| || ||| |||| ||||||||    
T  39125916 attaaaaacaaacaatatacaatag-----aaagaaagaacagtaagccaaagataaagatgaccctgttaattgatcttgaatttt-attctttc 39125827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 323 - 463
Target Start/End: Complemental strand, 39469490 - 39469350
Alignment:
Q  323 agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttctt 422  Q
    ||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  39469490 agctcaataatacgatcgtcaatcttgttaagtagatcctgggattctaggttgttatctacaatgcattgtagaacagcaatgagactagcaacttctt 39469391  T
Q  423 gatctctggccttgtcctgagttcacattcaaagtatttat 463  Q
    ||||| | ||||| |||||||||||||||||||||| ||||    
T  39469390 gatctttagccttttcctgagttcacattcaaagtacttat 39469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 301 - 442
Target Start/End: Complemental strand, 39125724 - 39125577
Alignment:
Q  301 aaaacactatttgcctctctgt------agctcaagaatacgattgtcaatcttgttaagtagatccttgaattctaggttgttatctataatgcattgt 394  Q
    ||||||||||||||||||||||      ||||||||||||| |  || |||||||||||||| ||||||||||| |||||||||||||||| |||||||     
T  39125724 aaaacactatttgcctctctgtcttttcagctcaagaatacaagcgtaaatcttgttaagtaaatccttgaattttaggttgttatctatattgcattgg 39125625  T
Q  395 agaacagctatgagacaagcaacttcttgatctctggccttgtcctga 442  Q
    | |||||||| ||||| ||||||||| ||| |||||||||||||||||    
T  39125624 ataacagctacgagactagcaacttcctgacctctggccttgtcctga 39125577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 39470516 - 39470801
Alignment:
Q  10 tttcattttccaagtattagccaaaatttcaattttctctgaacaaatgagagataactcttggagaacttctgcatcaagcgtat-gaaactaattaca 108  Q
    |||||||||||||| ||||  ||| ||||||| |||||| |||||||||||||| |  |||||  |||||| ||||||||| |||| ||| |||||||||    
T  39470516 tttcattttccaagcattaatcaagatttcaactttctcggaacaaatgagagaaa--tcttgaggaacttttgcatcaagtgtattgaagctaattaca 39470613  T
Q  109 taaactttgcgaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgttt-ctgcatatcaaatttaagcctttgagaaattaaaa 207  Q
     |||| ||| ||||||||  |||||| || |||| ||| ||||||||||  ||||||||| ||| || |  |||||| ||||||||||||||||||||||    
T  39470614 aaaacattgtgaacaaaagcgtggca-tgtactccaaataactagtttgt-tatgaaaacattttctacgcatcaaacttaagcctttgagaaattaaaa 39470711  T
Q  208 atgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaa--ttgctcatgagttttcattctttc 296  Q
    |||||| ||   ||  ||  | || ||||||||||  || ||||| |||||||||||||||||||   |  ||||||||||||||||||||    
T  39470712 atgaactattatcatgagtta-gatagaaagaatacagaaccaaaaatagagatgaccctgttaactattatcatgagttttcattctttc 39470801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 39395954 - 39396016
Alignment:
Q  385 aatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    ||||||||||||||||| |   |||||||||| |||||||||||||||||| |||||||||||    
T  39395954 aatgcattgtagaacagttcccagacaagcaatttcttgatctctggccttatcctgagttca 39396016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 39503680 - 39503739
Alignment:
Q  2 aaagtctatttcattttccaagtattagccaaaatttcaattttctctgaacaaatgaga 61  Q
    |||||||||||||||||||||| ||||||||| ||  ||| ||||||| |||||||||||    
T  39503680 aaagtctatttcattttccaagcattagccaagataccaaatttctcttaacaaatgaga 39503739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 39180089 - 39180008
Alignment:
Q  366 attctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||| |||||||| |||  |||||||||||||||||     |||| ||||| |||||||||||||||||| |||||||||||    
T  39180089 attcaaggttgttgtctgaaatgcattgtagaacagtcccaagactagcaatttcttgatctctggccttatcctgagttca 39180008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 463
Target Start/End: Complemental strand, 39145532 - 39145412
Alignment:
Q  343 aatcttgttaagtagatccttgaattctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctga 442  Q
    ||||||||||||| ||| ||   ||||||| ||||||||    || |||||||||||||||  ||||| |||||  |||||||||| ||| || |||||     
T  39145532 aatcttgttaagttgattctcagattctagcttgttatcacctatacattgtagaacagctccgagactagcaatctcttgatctcaggctttatcctgt 39145433  T
Q  443 gttcacattcaaagtatttat 463  Q
    |||||  ||||||||||||||    
T  39145432 gttcatgttcaaagtatttat 39145412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 39372574 - 39372498
Alignment:
Q  371 aggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    ||||||| ||| | |||||| || ||||||| | | |||| ||||| |||||||||||||||||| |||||||||||    
T  39372574 aggttgtgatccaaaatgcactgcagaacagttctcagactagcaatttcttgatctctggccttatcctgagttca 39372498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 463
Target Start/End: Original strand, 39424947 - 39425079
Alignment:
Q  332 atacgattgtcaatcttgttaagtagatccttga-attctaggttgttatctataatgcattgtagaacagctatgagacaagcaacttcttgatctctg 430  Q
    |||||||  ||||| ||||||||||||||| |   |||||||||||||||||  ||| || ||||  ||||||  ||||| ||||| |||||||||| ||    
T  39424947 atacgatcatcaatgttgttaagtagatccctctgattctaggttgttatctccaatacactgtactacagcttcgagactagcaatttcttgatctatg 39425046  T
Q  431 gccttgtcctgagttcacattcaaagtatttat 463  Q
    || || ||||| || ||  ||||||||||||||    
T  39425047 gctttttcctgtgtacaagttcaaagtatttat 39425079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 39386040 - 39386102
Alignment:
Q  385 aatgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||||||||||||||||     |||| ||||| |||||||||||||||||| |||||||||||    
T  39386040 aatgcattgtagaacagtccccagactagcaatttcttgatctctggccttatcctgagttca 39386102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 39225055 - 39225015
Alignment:
Q  407 agacaagcaacttcttgatctctggccttgtcctgagttca 447  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  39225055 agactagcaatttcttgatctctggccttatcctgagttca 39225015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 452
Target Start/End: Complemental strand, 38599661 - 38599532
Alignment:
Q  331 aatacgattgtcaatcttgttaagtagatccttgaattctaggttgtta--------tctataatgcattgtagaacagctatgagacaagcaacttctt 422  Q
    |||| ||| ||||||||||||||||||||||| | ||||||||||||||        |||||||||||  |||||||| ||||||||| |||||||| ||    
T  38599661 aatatgatcgtcaatcttgttaagtagatcctgggattctaggttgttaacttgatatctataatgcaccgtagaacaactatgagactagcaacttttt 38599562  T
Q  423 gatctctggccttgtcctgagttcacattc 452  Q
    ||| |||||||||||| |||||||| ||||    
T  38599561 gatgtctggccttgtcatgagttcatattc 38599532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 16115610 - 16115538
Alignment:
Q  386 atgcattgtagaacagctatgagacaagcaacttcttgatctctggccttgtcctgagttcacattcaaagta 458  Q
    |||||||||||||||| |   |||| ||| | |||||||||||| ||||| |||||||||||  |||||||||    
T  16115610 atgcattgtagaacagttcccagactagcgatttcttgatctctagccttatcctgagttcaagttcaaagta 16115538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University