View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11273_low_7 (Length: 425)
Name: NF11273_low_7
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11273_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 34140377 - 34139978
Alignment:
| Q |
19 |
caccactcacatgtattatgtggtgcatatccacttagttatattgcagcataatccataacattatgtaccttaccattttccaattcagttgcaaatt |
118 |
Q |
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| T |
34140377 |
caccactcacatgtattatgtggtgcatatccacttagttatattgcagcataatccataacattatgtaccttaccattttccaattcagttgcaaatt |
34140278 |
T |
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| Q |
119 |
ccaaatcatccatgtctcatttctatgatataaactgtcataaattatatatataaaagtgttaatttccttggaagaatcttagtattaatttctgcaa |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34140277 |
ccaaaccatccatgtctcatttctatgatataaactgtcataaattatatatataaaagtgttaatttccttggaagagtcttagtattaatttctgcaa |
34140178 |
T |
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| Q |
219 |
ctccatggcctccttaatgcttagtggtgctgaaaatacaaagcttattaatagcatagttccatctggattaggttctgtgagtcttaactttcacaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140177 |
ctccatggcctccttaatgcttagtggtgctgaaaatacaaagcttattaatagcatagttccatctggattaggttctgtgagtcttaactttcacaag |
34140078 |
T |
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| Q |
319 |
aagtgtttcttcagaaataatgtagtttcatatggcaacaaatacggtgcaagaaacttgacaccgcgatgcagcatctcacccgcaaggccttcttctc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34140077 |
aagtgtttcttcagaaataatgtagtttcatatggcaacaaatacggtgcaagaaacttgacaccgcgatgcagcatctcatccgcaaggccttcttctc |
34139978 |
T |
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