View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11273_low_9 (Length: 393)

Name: NF11273_low_9
Description: NF11273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11273_low_9
NF11273_low_9
[»] chr4 (9 HSPs)
chr4 (281-378)||(48899910-48900007)
chr4 (151-251)||(45346765-45346864)
chr4 (162-251)||(45342301-45342390)
chr4 (151-275)||(48872669-48872792)
chr4 (151-275)||(48877973-48878096)
chr4 (162-275)||(45364060-45364174)
chr4 (162-275)||(45375300-45375414)
chr4 (162-275)||(45382879-45382993)
chr4 (171-239)||(48865646-48865714)
[»] chr3 (2 HSPs)
chr3 (144-378)||(11014009-11014248)
chr3 (113-278)||(11023291-11023455)
[»] chr8 (1 HSPs)
chr8 (67-154)||(35647887-35647974)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 48900007 - 48899910
Alignment:
Q  281 gaacccctggaacaacagaaaataatcgacaatacacaacaagaatcaaactcaaaactacttgatcaaagcccgtgatactacttcatgaacaaact 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48900007 gaacccctggaacaacagaaaataatcgacaatacacaacaagaatcaaactcaaaactacttgatcaaagcccgtgatactacttcatgaacaaact 48899910  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 45346765 - 45346864
Alignment:
Q  151 aattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaaca 250  Q
    |||||||||| |||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| || ||||| ||| ||||||| |||||    
T  45346765 aattgtctat-ttttttagctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaaca 45346863  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 45342301 - 45342390
Alignment:
Q  162 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaacac 251  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||||| |||| || ||||| ||| ||||||| ||||||    
T  45342301 ttttttagctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacac 45342390  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 48872792 - 48872669
Alignment:
Q  151 aattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaaca 250  Q
    ||||||||| ||||||||| |||| ||| ||| |||||||| |||||||| ||||| ||||||| ||| |||| |  ||||  ||||||||||| |||||    
T  48872792 aattgtcta-gttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaaca 48872694  T
Q  251 cattaacaatttgtatattatatct 275  Q
    ||| || | ||| ||||||||||||    
T  48872693 catgaaaagtttttatattatatct 48872669  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 48878096 - 48877973
Alignment:
Q  151 aattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtgggaaaca 250  Q
    ||||||||| ||||||||| |||| ||| ||| |||||||| |||||||| ||||| ||||||| ||| |||| |  ||||  ||||||||||| |||||    
T  48878096 aattgtcta-gttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaaca 48877998  T
Q  251 cattaacaatttgtatattatatct 275  Q
    ||| || | ||| ||||||||||||    
T  48877997 catgaaaagtttttatattatatct 48877973  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 45364060 - 45364174
Alignment:
Q  162 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 260  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45364060 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45364159  T
Q  261 ttgtatattatatct 275  Q
    || ||||||||||||    
T  45364160 ttttatattatatct 45364174  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 45375300 - 45375414
Alignment:
Q  162 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 260  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45375300 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45375399  T
Q  261 ttgtatattatatct 275  Q
    || ||||||||||||    
T  45375400 ttttatattatatct 45375414  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 45382879 - 45382993
Alignment:
Q  162 ttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagcca-ttttaggtgggaaacacattaacaat 260  Q
    |||||||| |||| ||| ||||||| | ||||||||||||||| | ||||||||||| |||| || ||||| | || ||||| | ||||| || |||| |    
T  45382879 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45382978  T
Q  261 ttgtatattatatct 275  Q
    || ||||||||||||    
T  45382979 ttttatattatatct 45382993  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 48865714 - 48865646
Alignment:
Q  171 tgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccatttta 239  Q
    |||||||  |||||||||| |||||||||||||||| ||| ||| ||| |||| || ||||| ||||||    
T  48865714 tgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctatttta 48865646  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 378
Target Start/End: Original strand, 11014009 - 11014248
Alignment:
Q  144 ttagttgaattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatcatcaattaaaaaggcatgagccattttaggtg 243  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    ||||||||||| |||| || | ||| ||||||||||    
T  11014009 ttagttgaattgtgtat-ttttttagatgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtg 11014107  T
Q  244 ggaaacacattaacaatttgtatattatatcttt-acggaacccc-tggaacaacag----aaaataatcgacaatacacaacaagaatcaaactcaaaa 337  Q
    | ||| |||| || | ||| ||||| |||||||| ||  |||||| || ||| ||||      || ||| ||| |||||||||||||| ||||||| | |    
T  11014108 gaaaatacatgaatagtttttatatcatatctttaacataaccccttgaaactacagctcttgaagaatggactatacacaacaagaaccaaactctaca 11014207  T
Q  338 ctacttgatcaaagcccgtgatactacttcatgaacaaact 378  Q
    | |||||||||||||| ||||||| | ||||||||||||||    
T  11014208 ccacttgatcaaagcctgtgataccatttcatgaacaaact 11014248  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 11023291 - 11023455
Alignment:
Q  113 tcaatttcccacactctcaagttcaccttccttagttgaattgtctatgttttttagatgtccaagtaaactcagctcagatgaactttgtcgtaaatca 212  Q
    |||||||||||||||||||||||||||  | || ||||||||||  || ||||||||||||  ||| |||||||||||||||||||||||| || |||||    
T  11023291 tcaatttcccacactctcaagttcaccacctttggttgaattgtgaat-ttttttagatgttaaagcaaactcagctcagatgaactttgttgtgaatca 11023389  T
Q  213 tcaattaaaaaggcatgagccattttaggtgggaaacacattaacaatttgtatattatatcttta 278  Q
    ||||||  ||| || | ||| ||||||||||| ||  |||| || | ||| ||||| |||||||||    
T  11023390 tcaattccaaaagctttagctattttaggtggaaagtacatgaatagtttttatatcatatcttta 11023455  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 35647887 - 35647974
Alignment:
Q  67 acaagttagtaacaaaatacgaattgattaatgtcctcttcttcggtcaatttcccacactctcaagttcaccttccttagttgaatt 154  Q
    |||| ||||| |||||||| ||||||| | | ||||  ||||| ||||||||||||||||||| |||||||||||| || ||||||||    
T  35647887 acaacttagtcacaaaataggaattgactgacgtccctttctttggtcaatttcccacactcttaagttcaccttctttggttgaatt 35647974  T

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