View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_high_1 (Length: 979)

Name: NF11274_high_1
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_high_1
NF11274_high_1
[»] chr8 (18 HSPs)
chr8 (324-965)||(14726610-14727253)
chr8 (1-244)||(14727334-14727576)
chr8 (635-961)||(30648185-30648511)
chr8 (635-958)||(26088481-26088804)
chr8 (759-960)||(28865338-28865540)
chr8 (759-960)||(15329242-15329443)
chr8 (759-960)||(15509611-15509812)
chr8 (1-129)||(30648585-30648713)
chr8 (659-951)||(29552110-29552402)
chr8 (1-160)||(26088914-26089076)
chr8 (3-69)||(15329612-15329678)
chr8 (3-69)||(15509981-15510047)
chr8 (3-69)||(28865709-28865775)
chr8 (871-950)||(27712388-27712467)
chr8 (797-918)||(24508494-24508615)
chr8 (416-468)||(28700543-28700595)
chr8 (871-963)||(31075747-31075839)
chr8 (418-467)||(30085518-30085567)
[»] chr7 (4 HSPs)
chr7 (606-962)||(6611905-6612261)
chr7 (36-183)||(17292927-17293074)
chr7 (871-963)||(17293999-17294091)
chr7 (423-468)||(43930098-43930143)
[»] chr1 (3 HSPs)
chr1 (635-962)||(26087151-26087478)
chr1 (1-168)||(26086673-26086840)
chr1 (423-468)||(29068075-29068120)
[»] chr3 (2 HSPs)
chr3 (767-959)||(4819124-4819316)
chr3 (423-468)||(29235644-29235689)
[»] chr5 (1 HSPs)
chr5 (423-468)||(5990658-5990703)


Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 324 - 965
Target Start/End: Complemental strand, 14727253 - 14726610
Alignment:
Q  324 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattagaaacagataagtgtaatctatagtttctctcacactttataatacg 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |    
T  14727253 gttgttgtaacaaaataatcggtaaactacccatcataatgtggcaccaattaaaaacatacacgtgtaatctatagtttctctcacactttataatatg 14727154  T
Q  424 aggagtgttatggacaccctctttctaacactttctgtaaca--ctctattttcggaataattcatgtgggtctcagactttaaaatctagtgagactcg 521  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||| || | |||||||||||||||||||| ||||||||||| || ||||||||||    
T  14727153 aggagtgttatggacaccctctttctaacactttctctaacatactctcttctgggaataattcatgtgggtcttagactttaaaaactggtgagactcg 14727054  T
Q  522 catggagttcaaccaataggagatccggtgttagagagagtgttcctggcatttaatagaggcaaaaactagaaacatataacagagacatgtgatttta 621  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14727053 catggagttcaaccaataggagatcctgtgttagagagagtgttcttagcatttaatagaggcaaaaactagaaacatataaaagagacatgtgatttta 14726954  T
Q  622 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagc 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  14726953 gttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatatattattttctagg 14726854  T
Q  722 tgttcagcacctctcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctccc 821  Q
    | |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||     
T  14726853 ttttcagcacctctcttacaattttctttgagccagccaacaagtacttgaagtgcctcaaactgttcattcttaacagcaatatgcagtgcagtctcct 14726754  T
Q  822 gccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaa 921  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14726753 gccttacagtcaagtattcaatggattccggacacaataagagaaagcaaactaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaa 14726654  T
Q  922 gccttctcttcctttaactctaacaaggtctttattgatgtcca 965  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14726653 gccttctcttcctttaactctaacaaggtctttattgatgtcca 14726610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14727576 - 14727334
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||    
T  14727576 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctccaaattcttttccttcaaatttataccagtacttaccaacaa 14727477  T
Q  101 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727476 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaagaaatgtactagatctaa 14727377  T
Q  201 acaacctatctactttataagttgtctttccctcatctttcttt 244  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  14727376 acaacctatctactttataagttgtc-ttccctcatcttccttt 14727334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 635 - 961
Target Start/End: Complemental strand, 30648511 - 30648185
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| | ||||||||||| ||||||||||||||||| |||||||   ||| |||||||||||||||||||||||||||||||| || ||| ||||    
T  30648511 attacctgcgggtcactacttagtgctgaaatatgcaaaattgtgttgcttgccttatccctttggtttaatattttattttccagcttttgagcccctc 30648412  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    |||    ||||  |||||| |||  ||||||||||||||| |||||| | | |||||| ||||||| | | || ||||||||||| ||||| ||||||||    
T  30648411 tctgtgtattttttttgagccagctaacaagtacttgaagggcctcatattgttcatttttaacagaaatatggagtgcagtctcgcgcctcacagtcaa 30648312  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcct 934  Q
    ||||||||| |||||||||||||||  ||||||||||||||| |  | ||||||||||||||||| ||| |||||||||||||||| |||||||||||||    
T  30648311 gtattcaattgattccggacacaaacggagaaagtaagctaacatttgaacctcaccattttgacatgcaaaatgaagaggagttatgccttctcttcct 30648212  T
Q  935 ttaactctaacaaggtctttattgatg 961  Q
     ||||||||||||||||||||||||||    
T  30648211 ctaactctaacaaggtctttattgatg 30648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 635 - 958
Target Start/End: Complemental strand, 26088804 - 26088481
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| | ||||||| ||| ||||||||||||||||| |||||||   |||||||||  |||||||||||| |||||||||||  || ||| | ||    
T  26088804 attacctgcgggtcactacgtagtgctgaaatatgcaaaatcgtgttgcgtgcctcatcccactggtttaatattctattttccagcatttgagcccttc 26088705  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    ||||    |||  | |||| |||  ||||||||||||||| |||||||||| | |||||||||||||| | ||||||||||||||  |||| ||||| ||    
T  26088704 tctttgtgtttgttctgagccagataacaagtacttgaagagcctcaaactgtccattcttaacagcaatatgcagtgcagtctcgtgcctcacagttaa 26088605  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcct 934  Q
    ||||||||| |||||||||||||| |||||||||||  ||||| ||| |||||||||| |||||||||| ||||||||||||||||  ||||||||||||    
T  26088604 gtattcaatagattccggacacaagaagagaaagtattctaaatgattaacctcaccaatttgacttgcaaaatgaagaggagttataccttctcttcct 26088505  T
Q  935 ttaactctaacaaggtctttattg 958  Q
    |||| |||||||||||||||||||    
T  26088504 ttaattctaacaaggtctttattg 26088481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 759 - 960
Target Start/End: Complemental strand, 28865540 - 28865338
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcag-tctcccgccttacagtcaagtattcaatggattccggacaca 857  Q
    ||||||| |||||||  |||||||| | ||||||||||| |||| | |||||||  | |||| | ||| |||||| | | |||||||||||| |||||||    
T  28865540 caacaagcacttgaaaggcctcaaattgttcattcttaatagcaatatgcagtgggggtctcacacctcacagtccaatcttcaatggattctggacaca 28865441  T
Q  858 aaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttatt 957  Q
    | |||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| ||    
T  28865440 ataagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctctaactctaacaaggtctttgtt 28865341  T
Q  958 gat 960  Q
    |||    
T  28865340 gat 28865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 759 - 960
Target Start/End: Complemental strand, 15329443 - 15329242
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    ||||||| |||||||  | |||||| | ||||||||||| |||| | |||||||  ||||| | ||| |||||| | | |||||||||||| |||||| |    
T  15329443 caacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattctggacacga 15329344  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattg 958  Q
     |||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| |||    
T  15329343 gaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctaacaaggtctttgttg 15329244  T
Q  959 at 960  Q
    ||    
T  15329243 at 15329242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 759 - 960
Target Start/End: Complemental strand, 15509812 - 15509611
Alignment:
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    ||||||| |||||||  | |||||| | ||||||||||| |||| | |||||||  ||||| | ||| |||||| | | |||||||||||| |||||| |    
T  15509812 caacaagcacttgaaaggactcaaattgttcattcttaatagcaatatgcagtggggtctcgcacctcacagtccaatcttcaatggattctggacacga 15509713  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattg 958  Q
     |||||||||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||| |||    
T  15509712 gaagagaaagtgagctaaaagatcaacctcaccaatttggcttgcaaaatgaagaggagttaagccgtctcgtcctataactctaacaaggtctttgttg 15509613  T
Q  959 at 960  Q
    ||    
T  15509612 at 15509611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 30648713 - 30648585
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||   ||||||| ||| |||||  ||||||||||||||||||||    
T  30648713 ttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctcactattctttgccttcaaatctataccagtacttaccaacaa 30648614  T
Q  101 ttgaagtgcctgtgctaccaagtaattaa 129  Q
    | ||||||||||| |||| ||| ||||||    
T  30648613 tagaagtgcctgtactacaaagaaattaa 30648585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 659 - 951
Target Start/End: Complemental strand, 29552402 - 29552110
Alignment:
Q  659 gctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctctcttacaatttactttgaggcagt 758  Q
    |||||||| |||||||| ||||||||  || ||||| | ||||| | ||||||||||||||  | |  ||||||| || |  |||||  ||  || |||     
T  29552402 gctgaaatgtgcaaaatagtgttgcctgccacatccttctggttcagtattttattttccatatctatagcacctatcctgtaatttttttccagccagc 29552303  T
Q  759 caacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaa 858  Q
    |||| |||||||  || || || |||| | |||| |||| |||| | || ||||| ||||| | ||| ||||||||||||||||| ||||| |||||       
T  29552302 caactagtacttttagggcgtcgaactgtgcattattaatagcaatatgaagtgcggtctcgcacctcacagtcaagtattcaatagattcaggacatgc 29552203  T
Q  859 aaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtc 951  Q
       |||||||||||||||||| |||||||| ||| |||| |||||  ||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  29552202 gttgagaaagtaagctaaaaggtcaacctctccaatttggcttgcataatgaagaggagtcaagccttccttccctttaactctgacaaggtc 29552110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 26089076 - 26088914
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgat---accagtacttaccaa 97  Q
    ||||||||||||||||||  ||||| ||||||| |||||||||||| ||||||||||| | |||||||      ||||  ||   |||||||| || |||    
T  26089076 ttaataatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttctccagattctttgaacataaatctatacgaccagtacgtaacaa 26088977  T
Q  98 caattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatg 160  Q
     ||| |||||||||||||||| ||| |||| | ||||| |||| || ||||| ||||||||||    
T  26088976 taatagaagtgcctgtgctacgaagaaattgaagaacaatacaattattagagatcattcatg 26088914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 15329678 - 15329612
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  15329678 aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 15329612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 15510047 - 15509981
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  15510047 aataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 15509981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 28865775 - 28865709
Alignment:
Q  3 aataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattctttt 69  Q
    |||||||||||||| ||||||||  |||||| |||||| ||||||||||| ||||| ||||||||||    
T  28865775 aataatatactcttaatctctggaatgcttgctatgtccaatgctgttttattctccaaattctttt 28865709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 871 - 950
Target Start/End: Complemental strand, 27712467 - 27712388
Alignment:
Q  871 agctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggt 950  Q
    ||||||||| ||||| ||  |||| |||||||| |||||| |||||||  | |||||||||||||||||||| |||||||    
T  27712467 agctaaaaggtcaacttcttcattatgacttgcaaaatgaggaggagtccaaccttctcttcctttaactctgacaaggt 27712388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 918
Target Start/End: Complemental strand, 24508615 - 24508494
Alignment:
Q  797 acagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccatttt 896  Q
    |||||| | |||| ||||||||  | ||| ||||| | || |||||||||||| |||||   |||||| |  | ||||||||  ||| ||||||||||||    
T  24508615 acagcaatatgcaatgcagtcttacccctcacagttacgtcttcaatggattctggacaagcaaagaggagtttagctaaaatttcatcctcaccatttt 24508516  T
Q  897 gacttgcgaaatgaagaggagt 918  Q
    ||||||| ||||||||||||||    
T  24508515 gacttgcaaaatgaagaggagt 24508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 28700543 - 28700595
Alignment:
Q  416 ataatacgaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||| ||||||||||||| |||| |||||||||||||| ||| ||||||||    
T  28700543 ataataagaggagtgttatgtacactctctttctaacactctctctaacactc 28700595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 871 - 963
Target Start/End: Original strand, 31075747 - 31075839
Alignment:
Q  871 agctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattgatgtc 963  Q
    ||||| ||| ||||| || ||||||||||  || | ||||||||||||||| ||||| |||||||| | ||||||||| || ||||| |||||    
T  31075747 agctacaaggtcaacttctccattttgacaagcaatatgaagaggagttaaaccttcccttcctttgattctaacaagttccttattcatgtc 31075839  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 30085567 - 30085518
Alignment:
Q  418 aatacgaggagtgttatggacaccctctttctaacactttctgtaacact 467  Q
    |||| ||||| |||||||||||| |||||||||||||| ||| |||||||    
T  30085567 aataagaggaatgttatggacactctctttctaacactctctctaacact 30085518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 5e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 606 - 962
Target Start/End: Original strand, 6611905 - 6612261
Alignment:
Q  606 gagacatgtgattttagttattgcataaaattacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaa 705  Q
    ||||||||||||||||||||||  ||||  |||||||  ||||  ||||||| ||||||||||||||||||||||||||  |||||||||| | ||||||    
T  6611905 gagacatgtgattttagttattcaataaggttacctggcgctccgtacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaa 6612004  T
Q  706 tattttattttccagctgttcagcacctctct-tacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagt 804  Q
    ||||| ||||||||||| ||  |||||| ||  |||| | |  | | || ||| ||||||||||| |||| |||||||| | || |||||||| |||| |    
T  6612005 tatttgattttccagcttttgcgcacctatcgctaca-tgtgttctcagccagccaacaagtactcgaagggcctcaaattgttgattcttaatagcaat 6612103  T
Q  805 gtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcg 904  Q
     ||||||||||||||  |||| |||||||| |||||||||||||||||||||||   |||||| | |||||||||||||||||||||| ||||||||||     
T  6612104 atgcagtgcagtctcgtgcctcacagtcaaatattcaatggattccggacacaacttgagaaatttagctaaaagatcaacctcaccaatttgacttgca 6612203  T
Q  905 aaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattgatgt 962  Q
    |||||||||||||||| | ||||| |||||| || |||||||||||||||||||||||    
T  6612204 aaatgaagaggagttatggcttcttttccttgaattctaacaaggtctttattgatgt 6612261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 17292927 - 17293074
Alignment:
Q  36 atgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaaca 135  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||| || |||||||||||||||||| |||| |||||||||||  ||||||| ||||||     
T  17292927 atgtctaatgctgttttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaagcgcctgtgctacatagtaattcatgaacg 17293026  T
Q  136 gtacatttgttagaaatcattcatgtaagcaactaaaatcttcacaag 183  Q
     |||| |||||| | ||||||||| | |||||||||||| ||||||||    
T  17293027 atacaattgttaaagatcattcatattagcaactaaaatattcacaag 17293074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 871 - 963
Target Start/End: Original strand, 17293999 - 17294091
Alignment:
Q  871 agctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattgatgtc 963  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||    
T  17293999 agctaaaagttcaacctcaccaatttgacttgcaaaatgaagaggagttaagccttctctcccttgaactcgaacaaggtctttattaatgtc 17294091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 43930143 - 43930098
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  43930143 gaggagtgttatggacactctctttctaacactctctctaacactc 43930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 9e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 635 - 962
Target Start/End: Original strand, 26087151 - 26087478
Alignment:
Q  635 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgccgtcctcatccctttggtttaatattttattttccagctgttcagcacctc 734  Q
    ||||||||| ||||| ||||||| ||||||| ||||||||||||||||||  | || ||||| | ||||||||||  ||||||||||| | |||| ||||    
T  26087151 attacctgcggctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagctctacagcgcctc 26087250  T
Q  735 tcttacaatttactttgaggcagtcaacaagtacttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaa 834  Q
    | |    ||||  || ||| ||  |||||||||||||||| |||||| | | ||||||||| | |||| | |||| ||| ||||| | ||| |||||||     
T  26087251 tttgtttatttgtttcgagccatccaacaagtacttgaagggcctcatattgttcattcttgatagcaatatgcaatgcggtctcacacctcacagtcac 26087350  T
Q  835 gtattcaatggattccggacacaaaaagagaaagtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcct 934  Q
     | |  |||||| |  ||||| | || ||| || | ||||||||| |||||||| ||| |||||||||| |||||||||| |||||||||||||||||||    
T  26087351 atctctaatggaattaggacatacaaggaggaatttagctaaaaggtcaacctctccaatttgacttgcaaaatgaagagcagttaagccttctcttcct 26087450  T
Q  935 ttaactctaacaaggtctttattgatgt 962  Q
    | |||||||||||| |||||||||||||    
T  26087451 tgaactctaacaagttctttattgatgt 26087478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 26086673 - 26086840
Alignment:
Q  1 ttaataatatactcttcatctctggggtgcttgttatgtctaatgctgttttgttctcgaaattcttttcctccaaattgataccagtacttaccaacaa 100  Q
    |||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||| ||||||    
T  26086673 ttaataatatactcttgatctttggagtgcttgctatgtctaatgctgttttgttctccaaattctttgcctcgaaatttataccagtacttagcaacaa 26086772  T
Q  101 ttgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttagaaatcattcatgtaagcaac 168  Q
    | |||||  ||||||||||| ||| ||||| || | || |  ||||||| |||||||| || ||||||    
T  26086773 tagaagtttctgtgctaccacgtagttaataaaaaatataaatgttagagatcattcaagttagcaac 26086840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 29068075 - 29068120
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  29068075 gaggagtgttatggacactctctttctaacactttctctaacactc 29068120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 767 - 959
Target Start/End: Complemental strand, 4819316 - 4819124
Alignment:
Q  767 acttgaagtgcctcaaacttttcattcttaacagcagtgtgcagtgcagtctcccgccttacagtcaagtattcaatggattccggacacaaaaagagaa 866  Q
    |||||||| |||||| ||| ||||||| | |||||| | |||| |||||||||   ||| ||||||||||||||||| |||||||||||   ||||||||    
T  4819316 acttgaagggcctcatactgttcattcatgacagcaatatgcaatgcagtctcaaacctcacagtcaagtattcaatagattccggacaagcaaagagaa 4819217  T
Q  867 agtaagctaaaagatcaacctcaccattttgacttgcgaaatgaagaggagttaagccttctcttcctttaactctaacaaggtctttattga 959  Q
    | | ||||||||| |||||||| ||| |||||||||| |||||||||||||||| ||| | |||||||| ||||||||||||||| |||||||    
T  4819216 aattagctaaaagttcaacctcgccaatttgacttgcaaaatgaagaggagttatgccatttcttccttcaactctaacaaggtccttattga 4819124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 29235644 - 29235689
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||    
T  29235644 gaggagtgttatggacactctctttctaacactctctctaacactc 29235689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 5990703 - 5990658
Alignment:
Q  423 gaggagtgttatggacaccctctttctaacactttctgtaacactc 468  Q
    |||||||| ||||||||| ||||||||||||||||||  |||||||    
T  5990703 gaggagtgctatggacactctctttctaacactttctccaacactc 5990658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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