View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_16 (Length: 515)
Name: NF11274_high_16
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 39093620 - 39093132
Alignment:
| Q |
9 |
gagatgaaccgacgcagaagaaagaacattttcttctctggtcgttgttaatgtggaagagttctcaaacaaattggtgatatcagcaagagggaccctc |
108 |
Q |
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| T |
39093620 |
gagatgaaccgacgcagaagaaaaaacattttcttctctggtcgttgttaatgtggaagagttctcaaacaaattggtgatatcagcaagagggaccctc |
39093521 |
T |
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| Q |
109 |
ttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccattggtataaactggaggaatgt |
208 |
Q |
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| T |
39093520 |
ttcatctttcttttactactattcttcttgaaagatgaggccatgatagaaattgaattcttcttcttattttccccattggtataaactggaggaatgt |
39093421 |
T |
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| Q |
209 |
tttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatggaagaa |
308 |
Q |
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| T |
39093420 |
tttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgatgagattttcggagaaaagaaagaggaattcaatttgagatggaagaa |
39093321 |
T |
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| Q |
309 |
ggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaaaatgaaggagggagtga |
408 |
Q |
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| T |
39093320 |
ggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttggagtgtgtttgagagggaagaatgaaaatgaaggagggagtga |
39093221 |
T |
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| Q |
409 |
atatttannnnnnngagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatgaaaacgaggt |
497 |
Q |
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| T |
39093220 |
atatttatttttttgagaattttcaacaaaaatgggacaatgagggaaacattaaaatttttggtaatattaaggtatgaaaacgaggt |
39093132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 39232056 - 39231953
Alignment:
| Q |
34 |
acattttcttctctggtcgttgttaatgtggaagagttctcaaacaaattggtgatatcagcaagagggaccctcttcatctttcttttactactattct |
133 |
Q |
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| T |
39232056 |
acatgttcttctctggtcgttgttaatgtggaagagttgtcgaacaaatgggtgatatctgcaagagggctcctcttcatctttctttcagtactattct |
39231957 |
T |
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| Q |
134 |
tctt |
137 |
Q |
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|||| |
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| T |
39231956 |
tctt |
39231953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 39231885 - 39231835
Alignment:
| Q |
252 |
gcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatg |
302 |
Q |
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| T |
39231885 |
gcaacaagatgagattttcggagaaaagaatgaggaattcaatttgagatg |
39231835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 39231838 - 39231795
Alignment:
| Q |
341 |
gatgtgaaaatgtttttactttttggagtgtgtttgagagggaa |
384 |
Q |
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| T |
39231838 |
gatgtgaaaatgtttttactttttcgaatgtgtttgagagggaa |
39231795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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