View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_2 (Length: 826)
Name: NF11274_high_2
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 581; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 19 - 819
Target Start/End: Original strand, 1877368 - 1878155
Alignment:
| Q |
19 |
cccatgacttggtataggatatcattgccacttcttggaagtggtttattgttaggnnnnnnnggtgatgctaaatcaaaatctttgccctaatatgtag |
118 |
Q |
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| T |
1877368 |
cccatgacttggtatatgatatcattgccacttcttggaagtggtttattgttaggaaaaaaaggtgatgctaaatcaaaatctttgccatt-------- |
1877459 |
T |
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| Q |
119 |
gtattcgttaagttgaagatgctaaatctaaattatcgtggcagtgaagttgtcattttcactgttgttatacaagannnnnnnnncaattctacttgtt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |
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| T |
1877460 |
---ttc------ttgaagatgctaaatctaaattatcgtggcagtgaagttgtcattttcaccgttgttatacaagatttttttttctattctacttgtt |
1877550 |
T |
|
| Q |
219 |
tctcgtatatcttacgagattttcaattatttaatttgaaaagcacaaaacacgttaaaaaatccttcatttttgagttttgaaatcgaaaaattgggag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
1877551 |
tctcgtatatcttacgagattttcaattatttaatttgaaaagcacgaaacacgttaaaaaatctttcatttttgagttttaaaatcgaaaaattgggag |
1877650 |
T |
|
| Q |
319 |
tgcgacaatgtgaaaagannnnnnnnnngttatattcatatcatggcccaattttccatgtaaatggtaacaaaataatactattaatttacaaaacttt |
418 |
Q |
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| T |
1877651 |
tgcgacaatgtgaaaagattttttttta-ttatattgatatcatg-cccaattttccatgtaaatggtaacaaaataatactattaatttacaaaacttt |
1877748 |
T |
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| Q |
419 |
taagatattttgtcaacaccatctcatcaaaattatagtattaaactaatcacatgactcaaaataatataataagaaagtcttttgagtgtatcttaat |
518 |
Q |
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| T |
1877749 |
taagatattttgtcaacaccatcttatcaaaattatagtattaaactaatcacatgactcaaaataatataataagaaagtcttctgagtgtatcttaat |
1877848 |
T |
|
| Q |
519 |
ttaagacaaccagcttttaactttcattttggtttttgattaaaaagatggtcaactcaaaaactcat------catcattaagaacatataccatatat |
612 |
Q |
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| T |
1877849 |
ttaagacaaccagcttttaactttcattttggtttttgattaaaaagatggtcaactcaaaaactcatcatcatcatcattaagaacatataccatatat |
1877948 |
T |
|
| Q |
613 |
tctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatggattttctacc |
712 |
Q |
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| T |
1877949 |
tctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatggattttctacc |
1878048 |
T |
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| Q |
713 |
aattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcc |
812 |
Q |
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| T |
1878049 |
aattgtggtgattgcaagcaatgaattcagtgacgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcc |
1878148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 611 - 819
Target Start/End: Original strand, 1883959 - 1884167
Alignment:
| Q |
611 |
attctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaagatgacaagaagatggtccttttacatggattttcta |
710 |
Q |
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| T |
1883959 |
attctgaacttcaacaaggtttgtgattgttgtatataggataaaacttagaacacatagaaagatgacaagaaaacggtccttttacatggattttctg |
1884058 |
T |
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| Q |
711 |
ccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttg |
810 |
Q |
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| T |
1884059 |
ccacctgttgtgattataggcaatgaatgtgttgacatggctttactgactttgttcaaagcagctacacttcaagggatgaacaatcatgtctttgttg |
1884158 |
T |
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| Q |
811 |
cctatgctt |
819 |
Q |
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| T |
1884159 |
cctatgctt |
1884167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 748 - 819
Target Start/End: Original strand, 1890740 - 1890811
Alignment:
| Q |
748 |
tggctttagtcattttatacaaagcagccacacttcaagggatgaacaactatgtttttgttgcctatgctt |
819 |
Q |
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| T |
1890740 |
tggctttactcactttgttcaaagcagccacacttcaagggatgaacaatcatgtctttgttgcctatgctt |
1890811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 669 - 819
Target Start/End: Original strand, 1910967 - 1911117
Alignment:
| Q |
669 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttataca |
768 |
Q |
| |
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| T |
1910967 |
agaaacatgacaagaagatggtccttgtacatggatgttctgccacctgctgtgattatatgctatgaatgtattgacatggctttactcactttgttca |
1911066 |
T |
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| Q |
769 |
aagcagccacacttcaagggatgaacaactatgtttttgttgcctatgctt |
819 |
Q |
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||||||| |||||||||||||||||||| |||| ||| |||| ||||||| |
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| T |
1911067 |
aagcagctacacttcaagggatgaacaatcatgtctttattgcttatgctt |
1911117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 819
Target Start/End: Original strand, 1901922 - 1902072
Alignment:
| Q |
669 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttataca |
768 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||| || | ||| |||||||||| | ||||||||| ||| |||||||| ||| ||| | || |
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| T |
1901922 |
agaaacatgacaagaagatggtcactttacatggatgttttgccacctgtggtgattataggcaatgaatgttctgacatggctttactcactttgttca |
1902021 |
T |
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| Q |
769 |
aagcagccacacttcaagggatgaacaactatgtttttgttgcctatgctt |
819 |
Q |
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| T |
1902022 |
aagctgtaacacttcaagggatgaacaaccatgtctttattgcttatgctt |
1902072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 811
Target Start/End: Original strand, 1895509 - 1895653
Alignment:
| Q |
667 |
atagaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgattgcaagcaatgaattcagtgatgtggctttagtcattttata |
766 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| || | |||||| | ||||| | | | ||| | ||| |||||||| ||| ||| | |
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| T |
1895509 |
atagaaacatgacaagaagatggtccttttacatggatgttttgccaattttagtgatcataggacaggaaactattgaaatggctttactcactttgtt |
1895608 |
T |
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| Q |
767 |
caaagcagccacacttcaagggatgaacaactatgtttttgttgc |
811 |
Q |
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| T |
1895609 |
caaagcagccacaaatcaagggatgaacaaccatgtctttgttgc |
1895653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 669 - 725
Target Start/End: Original strand, 11549123 - 11549179
Alignment:
| Q |
669 |
agaaagatgacaagaagatggtccttttacatggattttctaccaattgtggtgatt |
725 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
11549123 |
agaaagatgaaaagaagatggtctttttacatggattttctaccggttgtagtgatt |
11549179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 725
Target Start/End: Original strand, 11537453 - 11537506
Alignment:
| Q |
672 |
aagatgacaagaagatggtccttttacatggattttctaccaattgtggtgatt |
725 |
Q |
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||||||| ||||||||| || |||||||| |||||||||||| |||| |||||| |
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| T |
11537453 |
aagatgaaaagaagatgatctttttacatagattttctaccagttgtagtgatt |
11537506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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