View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_20 (Length: 447)
Name: NF11274_high_20
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 3524617 - 3524357
Alignment:
| Q |
19 |
gataaagggtgaaatcaagaagtggaactgaaaagtgtatggggatttggaggagaaaatcaatgggcttgacgtatatagcaactctagacttcaa--a |
116 |
Q |
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| T |
3524617 |
gataaagggtgaaatcaagaagtggaactgaaaagtgtatggggatttggaggagaaaatcaatgggcttgacgtatatagcaactctagacttcaaata |
3524518 |
T |
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| Q |
117 |
tatgaataagagggtcttactaaagaggaggtcttaggtttg-nnnnnnntcggatctttggttgcttttgaagagtaaacatagtattatgtaccaaag |
215 |
Q |
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| T |
3524517 |
tatgaataagagggtcttactaaagaggaggtcttaggtttgaaaaaaaatcggatctttggttgcttttgaagagtaaacatagtattatgtaccaaag |
3524418 |
T |
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| Q |
216 |
agggagggtgaagtggttcaacgagggtgactctaacttgactttctttcatgcttgcatc |
276 |
Q |
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| T |
3524417 |
agggagggtgaagtggttcaacgagggtgactctaacttgactttctttcatgcttgcatc |
3524357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 290 - 438
Target Start/End: Complemental strand, 3523129 - 3522981
Alignment:
| Q |
290 |
catcaaaaactagttcggttctcaaatcagaaggttcatgacttcatcttccatcgactataagacaagaggtcttcatgtatttttctaaacctttctc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3523129 |
catcaaaaactagttcggttctcaaatcagaaggttcatgacttcatctttcatcgactataagacaagaggtcttcatgtatttttctaaacctttctc |
3523030 |
T |
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| Q |
390 |
ttatgtcaactgagaaatacctacttttgacatagtaatctctgcttct |
438 |
Q |
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| T |
3523029 |
ttatgtcaactgagaaatacctacttttgacatagtagtctttgcttct |
3522981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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