View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_21 (Length: 437)
Name: NF11274_high_21
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 33904463 - 33904880
Alignment:
| Q |
1 |
caaccaatagtaatcattgaatgaatagttaacaaagtctaaactttgatttagaattctgtcaaactaatagaatagtctaaactaatgcgcggcctat |
100 |
Q |
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| T |
33904463 |
caaccaatagtaatcattgaatgaatagttaacaaagtctaaactttgatttagaattctttcaaactaatagaatagtctaaactaatgtgcggcctat |
33904562 |
T |
|
| Q |
101 |
gtggttttgtaatttatttttgataaacgcggaaatacgtattattgtgttgaggattttgaaatcatcttttatcatacatgccaaatcattttctcct |
200 |
Q |
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| T |
33904563 |
gtggtttcgtaatttatttttgataaacgcggaaatacgtattattgtgttgaggattttgaaatcatcttttatcatacatgccaaatcattttctcct |
33904662 |
T |
|
| Q |
201 |
tagatgatcttttagtttccttgtgtcgattacccctatgaatcttgcaaagttgaacgattttccttctttgttacacttctttggcatgaacacgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
33904663 |
tagatgatcttttagtttccttgtgtcgattacccctatgaatcttgcaaagttgaacgattttccttccttgtttcgcttctttggcatgaacacgtca |
33904762 |
T |
|
| Q |
301 |
accaaagctccatattgttggaaggtttacataatatatcctacaaatatcctcctcgagaacattggtgaaataacacgtggtgatgtcatcgtatcag |
400 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904763 |
accaaagctccatattgttggaagggttacata--atatcctacaagta---tcctcgagaacattggtgaaataacacgtggtgatgtcatcgtatcag |
33904857 |
T |
|
| Q |
401 |
ttagttttgttatacgtctctct |
423 |
Q |
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||| |||||||||| |||||||| |
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| T |
33904858 |
ttaattttgttatatgtctctct |
33904880 |
T |
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