View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_30 (Length: 381)
Name: NF11274_high_30
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 30420870 - 30421225
Alignment:
| Q |
17 |
aaaatcaataatacagaaaaaattcttcaagagaatgtaagaagttttccttttcttgcactttgagatccaatgcattgcatagttgcatgattgttat |
116 |
Q |
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| T |
30420870 |
aaaatcaataatacagaaaaaattcttcaagagaatgtaagaagttttccttttcttgcactttgagatacaatgcattgcatagttgcatgattgttat |
30420969 |
T |
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| Q |
117 |
tgtaccttcttttcttctactgtgttggcacttggcctctattttccatnnnnnnnttgtcagcgtgaatcagaacagtatgacttaaattatagaatta |
216 |
Q |
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| T |
30420970 |
tgtaccttcttttcttctactgtgttggcacttggcctctattttccataaaaaa-ttgtcagcgtgaatcagaacagtatgacttaaattatggaatta |
30421068 |
T |
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| Q |
217 |
atgttattaaagttattcctagaaaaactactgccagaataaggcctaagaagttaatttgtgttctgagataaacaggtttgaattcaaaggttgttgg |
316 |
Q |
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| T |
30421069 |
atgttattaaaattattcctagaaaaactactgccagaataaggcctaagaagttaatttgtgttctgagataaacaggtttgaattcaaaggttgttgg |
30421168 |
T |
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| Q |
317 |
gagagaagaggatgtttcgagtggtttaagtagaagggcctcttcttcatctgtgct |
373 |
Q |
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| T |
30421169 |
gagagaggaggatgtttcgagtggtttaagtagaagggcctcttcttcatctgtgct |
30421225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 30411035 - 30411111
Alignment:
| Q |
297 |
ttgaattcaaaggttgttgggagagaagaggatgtttcgagtggtttaagtagaagggcctcttcttcatctgtgct |
373 |
Q |
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| T |
30411035 |
ttgaattcaaaggttgttggaagggaagaggatgttttgagtggtttaagcaacaaggcatcctcttcatctgtgct |
30411111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 30404285 - 30404340
Alignment:
| Q |
291 |
acaggtttgaattcaaaggttgttgggagagaagaggatgtttcgagtggtttaag |
346 |
Q |
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| T |
30404285 |
acaggtttgaatttgatagttgttgggagagaagaggaagtttcgagtggtttaag |
30404340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 30408108 - 30408157
Alignment:
| Q |
294 |
ggtttgaattcaaaggttgttgggagagaagaggatgtttcgagtggttt |
343 |
Q |
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| T |
30408108 |
ggtttgaattcagaggttgttggaagagaagaggttgtttcgggtggttt |
30408157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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