View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_37 (Length: 332)
Name: NF11274_high_37
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 34661014 - 34660693
Alignment:
| Q |
1 |
attatcaatatttttcatctctcttgttctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcn |
100 |
Q |
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| T |
34661014 |
attatcaatatttttcatctctcttgttctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtca |
34660915 |
T |
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| Q |
101 |
nnnnnnggtgtagcatcaagaaaatggaacattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattc |
200 |
Q |
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| T |
34660914 |
aaaaaaggtgtagcatcaagaaaatggaacattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattc |
34660815 |
T |
|
| Q |
201 |
aagacaatactggttggggttggggatttggcataccaacaattgtcatgttattgtccattgtggcctttgtgtttggttcaccattctataggactga |
300 |
Q |
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| T |
34660814 |
aagacaatactggttggggttggggatttggcataccaacaattgtcatgttattgtccattgtggcctttgtgtttggttcaccattctataggactga |
34660715 |
T |
|
| Q |
301 |
gaaacctaaagggagccctatg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34660714 |
gaaacctaaagggagccctatg |
34660693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 34666294 - 34666096
Alignment:
| Q |
27 |
ttctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcnnnnnnnggtgtagcatcaagaaaatg |
126 |
Q |
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|||||| |||||||||||||||||| |||||| | ||||||||||| |||| |||||| |||||||| ||| | ||||| | ||| |||||||| |
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| T |
34666294 |
ttctcacatctcttggatcaggtggcattagatcatgtgttgtgcctttttcaggagatcaatttgacatgaccaaaaaaggtgttgaatctagaaaatg |
34666195 |
T |
|
| Q |
127 |
gaacattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttgggg |
225 |
Q |
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| T |
34666194 |
gaacctcttcaattggtactttttttgcatgggatttgcttcattaagtgctttgaccattgtggtttacattcaagatcatatgggatggggttgggg |
34666096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 34646533 - 34646317
Alignment:
| Q |
29 |
ctcatatctcttggatcaggtggtattagaccttgtgttgtgccatttttaggagaacaatttgatatgtcnnnnnnnggtgtagcatcaagaaaatgga |
128 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||| || |||| | ||| ||||| || ||| | |||||||| || || ||||||| |
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| T |
34646533 |
ctcacatctcttggatcaggcggcattagaccttgtgttgtacctttttcggcagaccaattcgacatgacaaaagaaggtgtagcttctaggaaatgga |
34646434 |
T |
|
| Q |
129 |
acattttcaattggtattttttcttcatgggtatagcttctttaagtgctttgaccattgttgtttacattcaagacaatactggttggggttggggatt |
228 |
Q |
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|| | ||||||||||| |||||| |||||||| | |||||| |||||||||| |||||||| ||||| ||||||||||| ||||||||||||||| | |
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| T |
34646433 |
acctcttcaattggtactttttcatcatgggttttgcttctctaagtgctttaaccattgtggtttatgttcaagacaatgtgggttggggttggggact |
34646334 |
T |
|
| Q |
229 |
tggcataccaacaattg |
245 |
Q |
| |
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||| || ||||| |||| |
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| T |
34646333 |
tgggattccaaccattg |
34646317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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