View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11274_high_38 (Length: 326)
Name: NF11274_high_38
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11274_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 14104178 - 14104345
Alignment:
| Q |
151 |
aagtttaagcttggtgttattgctcttgttgcttctgggaatgtggcttggattgttttggtgtttggnnnnnnngggtatgctgttttgggtggttgtc |
250 |
Q |
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| T |
14104178 |
aagtttaagcttggtgttattgctcttgttgcttctgggaatgtggcttggattgttttggtgtttggtttttttgggtatgctgttttgtgtggttgtc |
14104277 |
T |
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| Q |
251 |
ccttaacttggactggtttttctatggaggctttctttgatctttgggagtttgctaaactctctgct |
318 |
Q |
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| T |
14104278 |
ccttaacttggactggtttttctatggaggctttctttgatctttgggagtttgctaaactctctgct |
14104345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14104046 - 14104115
Alignment:
| Q |
19 |
actcacgtgacttatgcattcttttttcctctttatttcttcttgcaaagtcagctcaagaataacatca |
88 |
Q |
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| T |
14104046 |
actcacgtgacttatgcattcttttttcctctttatttcttcttgcaaagtcagctcaagaataacatca |
14104115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 14092607 - 14092684
Alignment:
| Q |
241 |
ggtggttgtcccttaacttggactggtttttctatggaggctttctttgatctttgggagtttgctaaactctctgct |
318 |
Q |
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| T |
14092607 |
ggtggttgtcctttgacttggaatgggttttctatggaggctttttctgggctttgggaatttgttaaactttctgct |
14092684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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