View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_high_40 (Length: 309)

Name: NF11274_high_40
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_high_40
NF11274_high_40
[»] chr1 (6 HSPs)
chr1 (56-158)||(4530708-4530810)
chr1 (213-293)||(4530848-4530928)
chr1 (215-289)||(46358550-46358624)
chr1 (213-278)||(15374002-15374067)
chr1 (66-98)||(6541661-6541693)
chr1 (226-271)||(38618961-38619006)
[»] chr7 (6 HSPs)
chr7 (56-158)||(37693359-37693461)
chr7 (213-293)||(37693499-37693579)
chr7 (213-288)||(9379734-9379809)
chr7 (213-289)||(36661718-36661794)
chr7 (106-158)||(45762018-45762070)
chr7 (235-278)||(45762095-45762138)
[»] chr3 (6 HSPs)
chr3 (56-158)||(44385029-44385131)
chr3 (213-293)||(44385169-44385249)
chr3 (213-289)||(42146832-42146908)
chr3 (213-289)||(51492396-51492472)
chr3 (226-271)||(37373862-37373907)
chr3 (227-271)||(37373119-37373163)
[»] chr8 (1 HSPs)
chr8 (213-280)||(511382-511449)
[»] scaffold0016 (1 HSPs)
scaffold0016 (213-282)||(67929-67998)
[»] chr2 (1 HSPs)
chr2 (213-280)||(6198842-6198909)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 4530708 - 4530810
Alignment:
Q  56 tactatgagattaaaagcaacatgtaactatgagattttattttaaggtaagtttgttgctgatggattgatggtggtgatgggtgagtcactgagttgg 155  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4530708 tactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtgagtcactgagttgg 4530807  T
Q  156 gat 158  Q
    |||    
T  4530808 gat 4530810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 4530848 - 4530928
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggggaat 293  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  4530848 tctagtggtgagagtctataataaaaatatggtcttcatttgatctaagagttataaatcaactttcccattgtggggaat 4530928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 46358550 - 46358624
Alignment:
Q  215 tagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggg 289  Q
    |||||||||||| |||| ||||||||||||||||||||||||  |||| ||| |||||||||||||||| |||||    
T  46358550 tagtggtgagagactatgataaaactatgctcttcatttgattaaaggattagaaatcaactttcccatggtggg 46358624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 15374067 - 15374002
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaacttt 278  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||||    
T  15374067 tctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaacttt 15374002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 6541693 - 6541661
Alignment:
Q  66 ttaaaagcaacatgtaactatgagattttattt 98  Q
    |||||||||||||||||||||||||||||||||    
T  6541693 ttaaaagcaacatgtaactatgagattttattt 6541661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 38618961 - 38619006
Alignment:
Q  226 gtctataataaaactatgctcttcatttgatctaagggttataaat 271  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||    
T  38618961 gtctataataaaaatgtgctcttcatttgatcaaagggttttaaat 38619006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 37693359 - 37693461
Alignment:
Q  56 tactatgagattaaaagcaacatgtaactatgagattttattttaaggtaagtttgttgctgatggattgatggtggtgatgggtgagtcactgagttgg 155  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |    
T  37693359 tactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtgagtcactgagtttg 37693458  T
Q  156 gat 158  Q
    |||    
T  37693459 gat 37693461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 37693499 - 37693579
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggggaat 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  37693499 tctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataaatcaactttcccattgtggggaat 37693579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 9379734 - 9379809
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtgg 288  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  9379734 tctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttcccatagtgg 9379809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 36661794 - 36661718
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggg 289  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||| ||| | |||   |||||||||| |||||    
T  36661794 tctaatggtgagagtctataataaaattatgctcttcaattgatctaatggtcacaaaaatactttcccatggtggg 36661718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 45762018 - 45762070
Alignment:
Q  106 agtttgttgctgatggattgatggtggtgatgggtgagtcactgagttgggat 158  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  45762018 agtttgttgctgatggagtgatggtggtggtggatgagtcactcagttgggat 45762070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 45762095 - 45762138
Alignment:
Q  235 aaaactatgctcttcatttgatctaagggttataaatcaacttt 278  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  45762095 aaaattatgctcttcatttgatataagggttataaatcaacttt 45762138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 44385029 - 44385131
Alignment:
Q  56 tactatgagattaaaagcaacatgtaactatgagattttattttaaggtaagtttgttgctgatggattgatggtggtgatgggtgagtcactgagttgg 155  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |    
T  44385029 tactatgatattaaaagcaacatgtaactatgagattttgttttaaggtgagtttgttgctgatggagtgatggtggtggtgggtgagtcactgagtttg 44385128  T
Q  156 gat 158  Q
    |||    
T  44385129 gat 44385131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 44385169 - 44385249
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggggaat 293  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  44385169 tctagtggtgagagtctataataaaactatggtcttcatttgatctaagagttataaatcaactttcccattgtggggaat 44385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 42146908 - 42146832
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggg 289  Q
    |||||||||||||| |||| |||||||||| |||||||||||||| |||| ||| |||||||||||||||| |||||    
T  42146908 tctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtggg 42146832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 51492396 - 51492472
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcccatagtggg 289  Q
    |||||||||||||| |||| |||||||||| |||||||||||||| |||| ||| |||||||||||||||| |||||    
T  51492396 tctagtggtgagagactatgataaaactatactcttcatttgatccaaggattagaaatcaactttcccatggtggg 51492472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 37373907 - 37373862
Alignment:
Q  226 gtctataataaaactatgctcttcatttgatctaagggttataaat 271  Q
    ||||||||||||| | |||||||||||||||| ||||||| |||||    
T  37373907 gtctataataaaaatgtgctcttcatttgatcaaagggttttaaat 37373862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 37373163 - 37373119
Alignment:
Q  227 tctataataaaactatgctcttcatttgatctaagggttataaat 271  Q
    |||||||||||| | |||||||||||||||| ||||||| |||||    
T  37373163 tctataataaaaatgtgctcttcatttgatcaaagggttttaaat 37373119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 511382 - 511449
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcc 280  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||    
T  511382 tctagtggtgagagcctataataaaattatgctcttcatttgatccaaaggttataaatcaactttcc 511449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 67929 - 67998
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttccca 282  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||    
T  67929 tctagtggtgagagactatgataaaactatgctcttcatttgatccaaggattagaaatcaactttccca 67998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 6198842 - 6198909
Alignment:
Q  213 tctagtggtgagagtctataataaaactatgctcttcatttgatctaagggttataaatcaactttcc 280  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||| || |||||||||||||||||||    
T  6198842 tctagtggtgagagcctataataaaattatgctctttatttgatccaaaggttataaatcaactttcc 6198909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University