View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11274_high_5 (Length: 608)

Name: NF11274_high_5
Description: NF11274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11274_high_5
NF11274_high_5
[»] chr3 (5 HSPs)
chr3 (232-337)||(15993035-15993140)
chr3 (441-520)||(15994129-15994208)
chr3 (343-372)||(51614235-51614264)
chr3 (107-135)||(18201754-18201782)
chr3 (107-135)||(18201828-18201856)
[»] scaffold0192 (1 HSPs)
scaffold0192 (222-337)||(19122-19238)
[»] chr6 (11 HSPs)
chr6 (18-104)||(26840214-26840300)
chr6 (18-104)||(26840647-26840733)
chr6 (222-285)||(31661144-31661208)
chr6 (222-269)||(20910754-20910801)
chr6 (222-269)||(20925202-20925249)
chr6 (279-337)||(20910836-20910894)
chr6 (279-337)||(20925284-20925342)
chr6 (222-312)||(15298383-15298474)
chr6 (339-372)||(8637443-8637476)
chr6 (339-372)||(31971551-31971584)
chr6 (340-372)||(1918464-1918496)
[»] chr5 (4 HSPs)
chr5 (223-337)||(6702034-6702149)
chr5 (222-312)||(11298472-11298563)
chr5 (222-312)||(37340324-37340415)
chr5 (102-135)||(39343552-39343585)
[»] chr4 (6 HSPs)
chr4 (222-317)||(2304243-2304339)
chr4 (222-290)||(16030590-16030659)
chr4 (339-372)||(836241-836274)
chr4 (339-372)||(19908714-19908747)
chr4 (339-372)||(25978339-25978372)
chr4 (339-372)||(56551598-56551631)
[»] chr8 (5 HSPs)
chr8 (222-284)||(45239362-45239425)
chr8 (86-135)||(27016355-27016404)
chr8 (222-285)||(42319909-42319973)
chr8 (100-135)||(18291087-18291122)
chr8 (339-372)||(42208475-42208508)
[»] chr1 (4 HSPs)
chr1 (222-337)||(41862754-41862870)
chr1 (222-292)||(51382510-51382581)
chr1 (102-135)||(4009396-4009429)
chr1 (339-372)||(6000149-6000182)
[»] scaffold0521 (1 HSPs)
scaffold0521 (100-135)||(5232-5267)
[»] chr2 (3 HSPs)
chr2 (222-288)||(6673889-6673956)
chr2 (337-372)||(41778950-41778985)
chr2 (339-372)||(21558812-21558845)
[»] chr7 (2 HSPs)
chr7 (222-339)||(30063289-30063407)
chr7 (102-135)||(35345004-35345037)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 15993035 - 15993140
Alignment:
Q  232 gacccgtgcgccgcacggattttatgagccggaataattgatacacaataaaacaaaatatgttgaaatggaatttaaaaagtcagagtacataaacaaa 331  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||    
T  15993035 gacccgtgcgccgcacgggtcttatgaaccggaataattgatacacaataaaaggaaatatgttggaatggaatttaaaaagtcagaatacataaacaaa 15993134  T
Q  332 atttat 337  Q
    ||||||    
T  15993135 atttat 15993140  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 15994129 - 15994208
Alignment:
Q  441 cattcagtcctctacaccttcattgcattaaggtgccttttacagttagaattgtttgtgcatatcaagatcccaaacca 520  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  15994129 cattcagtcctctacaccttcattgcattaaggtgcctttttcagttagaattttttgtgcatatcaagatcccaaacca 15994208  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 372
Target Start/End: Original strand, 51614235 - 51614264
Alignment:
Q  343 aatgcaaaatatatgcaaggtccgaggttc 372  Q
    ||||||||||||||||||||||||||||||    
T  51614235 aatgcaaaatatatgcaaggtccgaggttc 51614264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 18201782 - 18201754
Alignment:
Q  107 gtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||||||||||||||||||||||    
T  18201782 gtgtgagagaaaagggagagaggtgtgag 18201754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 18201856 - 18201828
Alignment:
Q  107 gtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||||||||||||||||||||||    
T  18201856 gtgtgagagaaaagggagagaggtgtgag 18201828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 222 - 337
Target Start/End: Original strand, 19122 - 19238
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataattgatacacaataaaacaaaatatg-ttgaaatggaatttaaaaagtcagagt 320  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||| ||| |||||||| |||||||||||| |    
T  19122 ctagaacgccgatccgtgcgccgcacgggtcttatgagccggaataactaatacacaataaaacaaaatatgtttggaatggaatgtaaaaagtcagaat 19221  T
Q  321 acataaacaaaatttat 337  Q
    |||||||||||||||||    
T  19222 acataaacaaaatttat 19238  T

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Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26840300 - 26840214
Alignment:
Q  18 gagatgtaggtgttgtcgccggcgtgtcatgttcggtcaatgagaggagggaggaaatgaaaaggaaaccgatgatgaggtggtatc 104  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  26840300 gagatgtaggtgttgtcgccggcgagtcatgttcggtcgatgagaggagggaggaaatgaaaaggaaactgatgatgaagtggtatc 26840214  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 26840733 - 26840647
Alignment:
Q  18 gagatgtaggtgttgtcgccggcgtgtcatgttcggtcaatgagaggagggaggaaatgaaaaggaaaccgatgatgaggtggtatc 104  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||    
T  26840733 gagatgtaggtgttgtcgccggcgagtcatgttcggtcgatgagaggagggaggaaatgaaaaggaaactgatgataaagtggtatc 26840647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 31661144 - 31661208
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaac 285  Q
    ||||||||| |||||||||||||||| | | |||||||||||||||| |||||||||||||||||    
T  31661144 ctagaacgcggacccgtgcgccgcacaggtcttatgagccggaataatttgatacacaataaaac 31661208  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 20910754 - 20910801
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataat 269  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  20910754 ctagaacgccgacccgtgcgccgcacgggtcttatgagccggaataat 20910801  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 20925202 - 20925249
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataat 269  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||    
T  20925202 ctagaacgccgacccgtgcgccgcacgggtcttatgagccggaataat 20925249  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 20910836 - 20910894
Alignment:
Q  279 ataaaacaaaatatgttgaaatggaatttaaaaagtcagagtacataaacaaaatttat 337  Q
    ||||||| |||||||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  20910836 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttat 20910894  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 20925284 - 20925342
Alignment:
Q  279 ataaaacaaaatatgttgaaatggaatttaaaaagtcagagtacataaacaaaatttat 337  Q
    ||||||| |||||||||| ||||||||||||||| ||| | ||||||||||||||||||    
T  20925284 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttat 20925342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 15298474 - 15298383
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaaatatgttgaaatggaatttaaaaa 312  Q
    |||||||||||| ||||||||||||| | | |||| ||| ||||||| |||||||| |||||||  ||||||  || |||||||||||||||    
T  15298474 ctagaacgccgatccgtgcgccgcacaggtcttattagctggaataatttgatacataataaaatgaaatatagtggaatggaatttaaaaa 15298383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 8637476 - 8637443
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  8637476 ggacaatgcataatatatgcaaggtccgaggttc 8637443  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 31971551 - 31971584
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  31971551 ggacaatgcataatatatgcaaggtccgaggttc 31971584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 1918496 - 1918464
Alignment:
Q  340 gacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    ||||||||| |||||||||||||||||||||||    
T  1918496 gacaatgcataatatatgcaaggtccgaggttc 1918464  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 6702149 - 6702034
Alignment:
Q  223 tagaacgccgacccgtgcgccgcacggattttatgagccggaataatt-gatacacaataaaacaaaatatgttgaaatggaatttaaaaagtcagagta 321  Q
    |||||||||||||||||| |||||||| | ||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| | ||    
T  6702149 tagaacgccgacccgtgcaccgcacgggtcttatgagccagaataatttgatacacaataaaacgaaatatgttggaatggaatttaaaaaatcaaaata 6702050  T
Q  322 cataaacaaaatttat 337  Q
    || ||| |||||||||    
T  6702049 cacaaataaaatttat 6702034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 11298472 - 11298563
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaaatatgttgaaatggaatttaaaaa 312  Q
    ||||||||||||||||||||||| | || | |||||||| |||| || |||||||| |||||||  ||||||   | |||||||||||||||    
T  11298472 ctagaacgccgacccgtgcgccgtatgggtcttatgagctggaacaatttgatacataataaaatgaaatatagaggaatggaatttaaaaa 11298563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 37340415 - 37340324
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaa-taattgatacacaataaaacaaaatatgttgaaatggaatttaaaaa 312  Q
    ||||||||||||||||||| |||||||| | |||| ||| ||||  |||||||||| |||||||  ||||||  || |||| ||||||||||    
T  37340415 ctagaacgccgacccgtgccccgcacgggtcttattagctggaacaaattgatacataataaaatgaaatatagtggaatgaaatttaaaaa 37340324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 39343585 - 39343552
Alignment:
Q  102 atcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||||||||||||||||||| |||||||    
T  39343585 atcgggtgtgagagaaaagggagagatgtgtgag 39343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 2304339 - 2304243
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataatt-gatacacaataaaacaaaatatgttgaaatggaatttaaaaagtcag 317  Q
    ||||||||||||||||||||||||| || | |||||||||  ||||||| |||| |||||||||| ||||||||| |||||||||||||||| ||||    
T  2304339 ctagaacgccgacccgtgcgccgcatgggtcttatgagccaaaataatttgataaacaataaaacgaaatatgttaaaatggaatttaaaaaatcag 2304243  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 16030590 - 16030659
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaaat 290  Q
    ||||||| |||||||||||||||||||| | ||||||||  |||||| ||||||||||||||||| ||||    
T  16030590 ctagaacaccgacccgtgcgccgcacgggtcttatgagctcgaataatttgatacacaataaaacgaaat 16030659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 836274 - 836241
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    ||||||||||||||||||||||||||||||||||    
T  836274 ggacaatgcaaaatatatgcaaggtccgaggttc 836241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 19908714 - 19908747
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  19908714 ggacaatgcataatatatgcaaggtccgaggttc 19908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 25978339 - 25978372
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  25978339 ggacaatgcataatatatgcaaggtccgaggttc 25978372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 56551631 - 56551598
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  56551631 ggacaatgcataatatatgcaaggtccgaggttc 56551598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 45239362 - 45239425
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaat-aattgatacacaataaaa 284  Q
    |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  45239362 ctagaacgccgacccgtgcgccgcacgggtcttatgagccggaataaattgatacacaataaaa 45239425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 27016404 - 27016355
Alignment:
Q  86 ccgatgatgaggtggtatcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  27016404 ccgatgatgaagtggtatcgggtgtgagagaaaaaggagagaggtgtgag 27016355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 42319973 - 42319909
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaac 285  Q
    ||||||||| ||||||||||||||||   | |||||||||||||||| |||||||||||||||||    
T  42319973 ctagaacgcggacccgtgcgccgcacaagtcttatgagccggaataatttgatacacaataaaac 42319909  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 18291087 - 18291122
Alignment:
Q  100 gtatcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  18291087 gtatcgggtgtgagagaaaagggagagaggtgtgag 18291122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 42208508 - 42208475
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  42208508 ggacaatgcataatatatgcaaggtccgaggttc 42208475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 337
Target Start/End: Original strand, 41862754 - 41862870
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataatt-gatacacaataaaacaaaatatgttgaaatggaatttaaaaagtcagagt 320  Q
    ||||||||| ||||||||| ||||| || |  |||||| || ||||||| ||||||||||||||  |||||||||| |||| |||||||||| | ||| |    
T  41862754 ctagaacgctgacccgtgcaccgcatgggtcgtatgagtcgaaataatttgatacacaataaaatgaaatatgttggaatgaaatttaaaaaattagaat 41862853  T
Q  321 acataaacaaaatttat 337  Q
    |||| ||||||||||||    
T  41862854 acatgaacaaaatttat 41862870  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 51382510 - 51382581
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaaatat 292  Q
    ||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||| ||||||    
T  51382510 ctagaacgccgacccatgcgccgcacgggtcttatgagccggaataatttgatacacgataaaacgaaatat 51382581  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 4009429 - 4009396
Alignment:
Q  102 atcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||||||||||||||||||| |||||||    
T  4009429 atcgggtgtgagagaaaagggagagatgtgtgag 4009396  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 6000182 - 6000149
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  6000182 ggacaatgcataatatatgcaaggtccgaggttc 6000149  T

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Target: scaffold0521 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 5232 - 5267
Alignment:
Q  100 gtatcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  5232 gtatcgggtgtgagagaaaagggagagaggtgtgag 5267  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 6673956 - 6673889
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaa 288  Q
    |||||| ||||||||||||||||||||| | ||||||||  |||||| ||| ||||||||||||||||    
T  6673956 ctagaaggccgacccgtgcgccgcacgggtcttatgagcaagaataatttggtacacaataaaacaaa 6673889  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 372
Target Start/End: Complemental strand, 41778985 - 41778950
Alignment:
Q  337 ttggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||||| |||||||||||||||||||||||    
T  41778985 ttggacaatgcataatatatgcaaggtccgaggttc 41778950  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 21558845 - 21558812
Alignment:
Q  339 ggacaatgcaaaatatatgcaaggtccgaggttc 372  Q
    |||||||||| |||||||||||||||||||||||    
T  21558845 ggacaatgcataatatatgcaaggtccgaggttc 21558812  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 339
Target Start/End: Complemental strand, 30063407 - 30063289
Alignment:
Q  222 ctagaacgccgacccgtgcgccgcacggattttatgagccggaataa-ttgatacacaataaaacaaaatatgttgaaatggaatttaaaaagtcagagt 320  Q
    ||||||||||||||| |||||| ||||| | | || | | | ||||| |||||||||||||||||||||||| ||  |||||||| | |||| | |||      
T  30063407 ctagaacgccgacccatgcgccacacgggtctcataaactgaaataatttgatacacaataaaacaaaatatattagaatggaatctgaaaaattagaag 30063308  T
Q  321 acataaacaaaatttattg 339  Q
    ||| |||||||||||||||    
T  30063307 acaaaaacaaaatttattg 30063289  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 35345037 - 35345004
Alignment:
Q  102 atcgggtgtgagagaaaagggagagaggtgtgag 135  Q
    |||||||||||||||||||||||||| |||||||    
T  35345037 atcgggtgtgagagaaaagggagagatgtgtgag 35345004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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